Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 4.2e-209 731.1 369 100.0
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 9.9e-174 613.6 368 86.4
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 1.0e-170 603.6 371 85.2
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 8.9e-167 590.5 375 82.1
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 7.6e-166 587.4 375 81.9
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 1.1e-161 573.5 369 81.8
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 2.1e-160 569.3 366 80.9
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 4.7e-160 568.2 361 82.0
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 6.2e-160 567.8 376 78.7
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 5.1e-154 548.1 365 77.5
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 8.1e-152 540.8 371 75.5
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 1.8e-151 539.7 369 75.3
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 4.0e-151 538.5 369 75.3
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 5.3e-151 538.1 373 74.3
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 2.6e-150 535.8 368 73.6
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 4.5e-150 535.0 381 72.7
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 5.8e-150 534.6 368 75.5
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 4.9e-149 531.6 372 75.0
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 8.4e-149 530.8 372 73.1
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 2.4e-148 529.3 332 80.7
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 4.6e-147 525.0 373 73.2
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 9.6e-145 517.3 368 72.8
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 1.4e-143 513.5 369 72.4
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 1.8e-143 513.1 368 72.8
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 5.3e-143 511.5 369 72.1
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 2.6e-142 509.2 374 69.3
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 4.5e-142 508.4 338 78.4
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 5.8e-142 508.1 367 70.8
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 7.6e-142 507.7 379 70.4
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 4.9e-141 505.0 368 70.7
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 6.4e-141 504.6 368 70.7
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 1.1e-140 503.8 361 71.5
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 1.1e-140 503.8 370 71.1
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 1.4e-140 503.4 359 73.3
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 3.2e-140 502.3 368 71.5
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 7.1e-140 501.1 372 69.9
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 1.2e-139 500.4 360 71.4
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 1.6e-139 500.0 363 71.3
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 2.1e-139 499.6 365 70.7
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 4.6e-139 498.4 366 68.6
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 4.6e-139 498.4 375 69.6
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 1.0e-138 497.3 374 70.9
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 7.4e-137 491.1 361 70.6
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 9.6e-137 490.7 373 68.9
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 1.6e-136 490.0 372 68.0
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 1.6e-136 490.0 399 64.7
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 2.8e-136 489.2 335 74.0
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 1.4e-135 486.9 357 70.0
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 9.0e-135 484.2 328 73.2
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 9.0e-135 484.2 372 69.4
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 1.5e-134 483.4 405 63.5
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 2.0e-134 483.0 373 67.0
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 3.4e-134 482.3 377 68.4
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 4.5e-134 481.9 372 69.1
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 5.8e-134 481.5 324 75.9
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 7.6e-134 481.1 372 69.1
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 1.7e-133 479.9 364 67.6
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 2.2e-133 479.6 365 68.5
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 2.2e-133 479.6 328 73.8
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 4.9e-133 478.4 365 68.5
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 1.1e-132 477.2 365 67.9
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 1.4e-132 476.9 367 68.4
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 1.4e-132 476.9 396 65.7
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 1.4e-132 476.9 328 72.9
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 2.5e-132 476.1 365 67.7
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 4.2e-132 475.3 370 66.5
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 7.1e-132 474.6 365 68.5
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 1.2e-131 473.8 365 67.4
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 2.1e-131 473.0 330 71.2
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 4.6e-131 471.9 380 66.6
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 6.0e-131 471.5 363 67.2
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 7.9e-131 471.1 365 67.7
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 7.9e-131 471.1 324 73.1
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 1.3e-130 470.3 280 86.8
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 1.8e-130 469.9 425 58.8
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 3.0e-130 469.2 365 66.3
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 1.1e-129 467.2 362 67.7
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 1.9e-129 466.5 378 64.8
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 5.7e-129 464.9 374 64.4
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 5.7e-129 464.9 371 65.8
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 5.7e-129 464.9 372 66.4
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 9.7e-129 464.2 365 66.0
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 1.3e-128 463.8 333 72.1
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 1.8e-127 459.9 390 64.4
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 2.4e-127 459.5 333 70.6
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 1.5e-126 456.8 356 66.9
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 7.7e-126 454.5 362 65.7
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 7.7e-126 454.5 368 65.5
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 1.7e-125 453.4 333 69.7
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 1.7e-125 453.4 333 69.7
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 1.7e-125 453.4 377 62.6
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 2.9e-125 452.6 333 69.7
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 2.9e-125 452.6 295 77.6
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 6.5e-125 451.4 304 74.7
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 1.6e-123 446.8 302 74.2
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 2.1e-123 446.4 365 63.6
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 2.1e-123 446.4 327 68.5
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 1.1e-121 440.7 322 70.2
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 1.1e-121 440.7 313 72.5
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 4.8e-120 435.3 330 67.9
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.3e-117 427.2 364 63.7
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 6.5e-117 424.9 302 72.2
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 3.2e-116 422.5 253 80.6
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 4.5e-110 402.1 269 77.0
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 4.2e-100 369.0 315 60.3
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 5.5e-100 368.6 293 64.8
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 4.0e-98 362.5 242 75.2
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 4.4e-97 359.0 375 56.3
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 1.7e-96 357.1 272 68.0
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 2.2e-96 356.7 327 56.0
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 1.1e-95 354.4 363 54.8
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 2.0e-94 350.1 316 61.1
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 3.8e-93 345.9 368 54.6
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 2.5e-92 343.2 359 53.8
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 2.5e-92 343.2 337 52.5
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 1.4e-90 337.4 372 52.4
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 8.3e-88 328.2 195 81.0
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.9e-84 317.0 266 63.2
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 2.1e-83 313.5 341 50.7
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 3.0e-82 309.7 176 88.6
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 4.1e-79 299.3 204 76.5
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 9.2e-79 298.1 294 54.8
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 2.9e-77 293.1 196 81.1
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 5.0e-77 292.4 203 75.4
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 7.3e-76 288.5 195 76.4
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 5.0e-69 265.8 165 83.6
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 2.0e-65 253.8 356 39.6
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 2.1e-59 233.8 171 69.6
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.1e-58 231.5 212 58.5
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 6.8e-58 228.8 172 69.8
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 8.9e-58 228.4 357 38.9
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 8.1e-51 205.3 355 37.2
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.2e-49 201.4 123 74.8
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 5.8e-49 199.1 125 72.0
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 6.4e-48 195.7 295 37.3
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 4.2e-47 193.0 251 43.8
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 2.1e-46 190.7 148 64.2
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 1.0e-45 188.3 121 72.7
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 9.3e-39 165.2 130 63.8
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.2e-38 164.9 376 31.9
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 3.6e-35 153.3 98 82.7
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 4.9e-32 142.9 108 63.0
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 3.2e-31 140.2 158 51.3
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 3.7e-27 126.7 324 32.7
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 8.1e-27 125.6 106 62.3
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 1.0e-24 118.6 70 78.6
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 8.2e-19 99.0 78 64.1
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 6.9e-18 95.9 71 64.8
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 7.7e-09 65.9 43 72.1


User provided reference genes

Program Settings