Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.5e-62 242.7 121 100.0
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 8.0e-40 167.2 121 75.2
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 1.5e-38 162.9 121 70.2
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.6e-38 162.2 121 75.2
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 1.1e-36 156.8 121 74.4
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 1.6e-35 152.9 124 71.8
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 3.5e-35 151.8 119 68.9
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 1.0e-34 150.2 126 65.1
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 2.3e-34 149.1 119 68.1
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 2.9e-29 132.1 120 59.2
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 2.9e-29 132.1 118 65.3
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 4.9e-29 131.3 121 57.9
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 4.9e-29 131.3 120 58.3
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 2.0e-27 125.9 117 65.0
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.7e-27 125.6 120 55.0
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 3.5e-27 125.2 120 58.3
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 4.6e-27 124.8 120 54.2
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 4.6e-27 124.8 120 54.2
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 5.9e-27 124.4 121 57.9
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.0e-26 123.6 120 56.7
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.0e-26 123.6 118 60.2
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 1.3e-26 123.2 114 58.8
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.7e-26 122.9 120 55.8
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.7e-26 122.9 114 58.8
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 3.9e-26 121.7 119 58.0
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 6.6e-26 120.9 120 56.7
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 2.5e-25 119.0 116 56.0
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 3.3e-25 118.6 118 60.2
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.3e-25 118.6 119 54.6
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 4.3e-25 118.2 118 54.2
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 7.3e-25 117.5 119 54.6
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 7.3e-25 117.5 114 55.3
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 7.3e-25 117.5 119 55.5
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 2.8e-24 115.5 113 57.5
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.0e-23 113.6 120 52.5
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.8e-23 112.8 119 55.5
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.3e-23 112.5 120 52.5
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 5.2e-23 111.3 114 55.3
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 5.2e-23 111.3 118 55.1
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.6e-22 109.0 120 52.5
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 9.8e-22 107.1 120 49.2
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 1.7e-21 106.3 118 49.2
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 1.1e-20 103.6 119 49.6
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.9e-20 102.8 119 49.6
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.0e-19 99.4 119 47.9
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 4.6e-19 98.2 121 46.3
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.3e-18 95.9 125 43.2
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 5.0e-18 94.7 120 43.3
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 1.9e-17 92.8 118 44.1
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 2.5e-17 92.4 114 43.9
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 2.5e-17 92.4 111 49.5
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 2.5e-17 92.4 115 55.7
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 4.3e-17 91.7 125 44.8
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 5.6e-17 91.3 112 45.5
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 9.5e-17 90.5 113 46.0
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 9.5e-17 90.5 111 53.2
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.2e-16 90.1 115 40.0
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.2e-16 90.1 115 40.0
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 2.1e-16 89.4 119 42.0
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 2.8e-16 89.0 119 43.7
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 4.7e-16 88.2 119 42.0
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 6.2e-16 87.8 119 42.0
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 8.1e-16 87.4 110 53.6
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.1e-15 87.0 118 39.8
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 1.1e-15 87.0 119 41.2
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.4e-15 86.7 120 41.7
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.4e-15 86.7 118 43.2
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 2.3e-15 85.9 112 47.3
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 3.1e-15 85.5 119 42.0
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 1.5e-14 83.2 119 40.3
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 2.6e-14 82.4 121 42.1
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 4.4e-14 81.6 112 42.9
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 5.8e-14 81.3 120 42.5
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 7.5e-14 80.9 119 40.3
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.3e-13 80.1 122 43.4
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 1.3e-13 80.1 116 36.2
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 1.3e-13 80.1 115 42.6
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 1.7e-13 79.7 77 57.1
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 2.2e-13 79.3 122 41.8
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.2e-13 79.3 113 46.9
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 2.2e-13 79.3 115 43.5
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 6.4e-13 77.8 123 41.5
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 6.4e-13 77.8 123 41.5
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 6.4e-13 77.8 123 41.5
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 3.2e-12 75.5 122 40.2
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 3.2e-12 75.5 122 39.3
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.2e-11 73.6 118 39.0
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.6e-11 73.2 117 38.5
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 2.1e-11 72.8 131 36.6
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.5e-11 72.0 116 38.8
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 6.0e-11 71.2 123 40.7
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 6.0e-11 71.2 102 43.1
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 6.0e-11 71.2 114 40.4
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 6.0e-11 71.2 114 40.4
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 6.0e-11 71.2 119 41.2
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 1.7e-10 69.7 118 36.4
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 1.7e-10 69.7 118 40.7
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.0e-10 68.9 116 38.8
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 3.9e-10 68.6 116 32.8
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 1.5e-09 66.6 112 37.5
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 2.5e-09 65.9 118 36.4
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 3.3e-09 65.5 119 34.5
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 3.3e-09 65.5 118 37.3
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 4.3e-09 65.1 133 33.8
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 4.3e-09 65.1 117 41.9
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 7.3e-09 64.3 119 32.8
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 7.3e-09 64.3 126 36.5
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 9.5e-09 63.9 112 38.4
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 9.5e-09 63.9 113 41.6
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 1.2e-08 63.5 113 41.6
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.2e-08 63.5 118 35.6
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.2e-08 63.5 116 38.8
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.2e-08 63.5 116 38.8
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 1.2e-08 63.5 111 36.9
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.6e-08 63.2 118 35.6
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 2.1e-08 62.8 116 35.3
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.8e-08 62.4 120 40.0
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 3.6e-08 62.0 131 33.6
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 6.2e-08 61.2 116 36.2
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.3e-07 59.3 118 37.3
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 3.1e-07 58.9 117 35.0
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 4.0e-07 58.5 114 35.1
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 6.8e-07 57.8 116 35.3
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 1.2e-06 57.0 118 32.2
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.5e-06 56.6 119 34.5
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.0e-06 56.2 111 32.4
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 2.6e-06 55.8 119 31.1


User provided reference genes

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