Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00551_v3 Cicer arietinum L. HOM05D006050 ORTHO05D007457 3.2e-284 981.1 505 100.0
TPR.G28613 Trifolium pratense HOM05D006050 ORTHO05D007457 6.0e-230 800.8 511 83.4
Medtr2g019630 Medicago truncatula HOM05D006050 ORTHO05D007457 6.2e-227 790.8 510 82.7
Psat1g190800 Pisum sativum HOM05D006050 ORTHO05D007457 5.1e-221 771.2 466 87.1
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 2.1e-219 765.8 511 79.5
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 1.8e-218 762.7 508 79.5
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 3.8e-208 728.4 511 76.5
VMungo0540G2452 Vigna mungo HOM05D006050 ORTHO05D007457 7.8e-206 720.7 510 76.1
arahy.Tifrunner.gnm1.ann1.9VA34X Arachis hypogaea HOM05D006050 ORTHO05D007457 2.6e-177 625.9 535 66.7
arahy.Tifrunner.gnm1.ann1.49YCVY Arachis hypogaea HOM05D006050 ORTHO05D007457 5.0e-176 621.7 545 65.5
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 9.7e-156 554.3 514 59.7
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 1.3e-155 553.9 508 61.6
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 1.7e-155 553.5 510 59.6
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 2.0e-153 546.6 503 59.2
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 1.7e-152 543.5 512 58.4
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 1.1e-151 540.8 449 64.6
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 2.7e-150 536.2 444 64.2
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 3.0e-149 532.7 449 62.6
RcHm_v2.0_Chr5g0013951 Rosa chinensis HOM05D006050 ORTHO05D007457 1.5e-148 530.4 522 57.9
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 1.3e-147 527.3 507 59.4
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 1.8e-146 523.5 501 60.3
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 1.6e-145 520.4 522 56.3
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 1.7e-144 516.9 503 58.3
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 1.1e-143 514.2 464 60.6
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 2.5e-143 513.1 491 60.1
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 1.2e-142 510.8 458 60.9
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 1.4e-141 507.3 408 66.9
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 5.2e-141 505.4 440 61.6
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 1.7e-139 500.4 498 55.0
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 8.5e-136 488.0 470 57.9
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 2.1e-134 483.4 524 54.2
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 3.6e-134 482.6 545 53.8
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 4.7e-134 482.3 530 53.6
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 8.0e-134 481.5 494 56.3
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.0e-133 481.1 444 58.6
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.4e-133 480.7 524 54.0
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 2.0e-132 476.9 447 57.5
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 3.4e-132 476.1 489 55.6
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 5.7e-132 475.3 418 61.0
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 1.8e-130 470.3 484 54.1
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 9.2e-130 468.0 445 56.9
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 1.2e-129 467.6 483 52.6
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 1.7e-128 463.8 452 58.6
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 1.7e-128 463.8 467 54.2
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 2.3e-128 463.4 433 57.7
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 6.6e-128 461.8 447 56.4
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 9.5e-127 458.0 447 56.4
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 1.2e-126 457.6 488 53.7
PSO017G0250 Papaver somniferum HOM05D006050 ORTHO05D007457 1.2e-126 457.6 461 56.4
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 2.8e-126 456.4 449 56.3
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 2.8e-126 456.4 504 52.4
MELO3C002716.2 Cucumis melo HOM05D006050 ORTHO05D007457 3.0e-125 453.0 444 57.9
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 5.2e-125 452.2 475 53.5
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.2e-124 451.1 475 53.9
PSO170G3783 Papaver somniferum HOM05D006050 ORTHO05D007457 1.2e-124 451.1 446 57.0
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 1.5e-124 450.7 449 56.1
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 1.5e-124 450.7 455 55.8
Glyma.13G217500 Glycine max HOM05D006050 ORTHO05D007457 2.0e-124 450.3 326 72.1
THA.LOC104812850 Tarenaya hassleriana HOM05D006050 ORTHO05D007457 7.0e-122 441.8 496 52.4
AL7G36120 Arabidopsis lyrata HOM05D006050 ORTHO05D007457 1.6e-121 440.7 448 56.2
Sp7g15790 Schrenkiella parvula HOM05D006050 ORTHO05D007457 2.7e-121 439.9 509 52.3
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 3.5e-121 439.5 426 55.9
vmacro04186 Vaccinium macrocarpon HOM05D006050 ORTHO05D007457 2.3e-120 436.8 372 62.6
Thhalv10025036m.g Eutrema salsugineum HOM05D006050 ORTHO05D007457 8.6e-120 434.9 507 52.9
AT4G18270 Arabidopsis thaliana HOM05D006050 ORTHO05D007457 1.9e-119 433.7 448 55.4
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 1.9e-119 433.7 495 52.3
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 8.0e-118 428.3 419 56.8
Gorai.011G043000 Gossypium raimondii HOM05D006050 ORTHO05D007457 1.4e-117 427.6 388 58.0
DCAR_003921 Daucus carota HOM05D006050 ORTHO05D007457 1.2e-113 414.5 428 55.8
Lsat_1_v5_gn_1_97741 Lactuca sativa HOM05D006050 ORTHO05D007457 1.6e-113 414.1 428 56.1
A03p51180 Brassica napus HOM05D006050 ORTHO05D007457 1.0e-112 411.4 486 51.9
BraA03t14200Z Brassica rapa HOM05D006050 ORTHO05D007457 1.0e-112 411.4 443 54.4
C07p49580 Brassica napus HOM05D006050 ORTHO05D007457 3.0e-112 409.8 502 50.8
EL10Ac8g19724 Beta vulgaris HOM05D006050 ORTHO05D007457 5.0e-112 409.1 447 51.2
BolC7t45462H Brassica oleracea HOM05D006050 ORTHO05D007457 5.6e-111 405.6 502 50.4
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 3.6e-110 402.9 301 72.4
SalBow8G2368 Salvia bowleyana HOM05D006050 ORTHO05D007457 3.1e-109 399.8 399 55.1
Cpa.g.sc166.17 Carica papaya HOM05D006050 ORTHO05D007457 4.0e-109 399.4 307 68.7
Ah.09g232650 Amaranthus hybridus HOM05D006050 ORTHO05D007457 3.4e-108 396.4 451 50.1
Lalb_Chr18g0055521 Lupinus albus HOM05D006050 ORTHO05D007457 4.4e-108 396.0 321 69.5
ATR0044G011 Amborella trichopoda HOM05D006050 ORTHO05D007457 6.6e-104 382.1 394 52.0
Aa31LG6G960 Aethionema arabicum HOM05D006050 ORTHO05D007457 1.1e-103 381.3 501 47.3
HPP92_021321 Vanilla planifolia HOM05D006050 ORTHO05D007457 1.4e-101 374.4 368 54.3
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 6.8e-101 372.1 444 50.0
HPP92_008747 Vanilla planifolia HOM05D006050 ORTHO05D007457 9.9e-100 368.2 386 50.3
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 2.7e-97 360.1 554 41.9
FvH4_3g05710 Fragaria vesca HOM05D006050 ORTHO05D007457 1.4e-93 347.8 321 58.3
AagrBONN_evm.TU.Sc2ySwM_228.2617 Anthoceros agrestis HOM05D006050 ORTHO05D007457 5.2e-93 345.9 443 45.8
SMO239G0146 Selaginella moellendorffii HOM05D006050 ORTHO05D007457 1.3e-88 331.3 326 53.1
Mapoly0001s0010 Marchantia polymorpha HOM05D006050 ORTHO05D007457 4.0e-85 319.7 359 47.9
Prupe.4G079600 Prunus persica HOM05D006050 ORTHO05D007457 3.3e-79 300.1 318 53.5
CBR_g3965 Chara braunii HOM05D006050 ORTHO05D007457 8.1e-78 295.4 443 40.2
Lalb_Chr18g0055531 Lupinus albus HOM05D006050 ORTHO05D007457 1.1e-77 295.0 191 79.1
SGA_v2.0_scaffold333G48995 Striga asiatica HOM05D001706 ORTHO05D007457 6.9e-77 292.4 463 42.5
COL.COLO4_31087 Corchorus olitorius HOM05D006050 ORTHO05D007457 5.5e-66 256.1 263 52.9
MBI10_g02216_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 5.1e-64 249.6 213 62.0
AUR62030211 Chenopodium quinoa HOM05D006050 ORTHO05D007457 2.4e-61 240.7 314 47.1
Carub.0007s2301 Capsella rubella HOM05D006050 ORTHO05D007457 1.4e-58 231.5 190 66.8
MBI10_g02215_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 3.2e-58 230.3 262 51.5
PGSC0003DMG401021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 1.4e-53 214.9 166 66.9
Carub.0007s2300 Capsella rubella HOM05D006050 ORTHO05D007457 1.0e-51 208.8 292 44.2
Zm00001eb120180 Zea mays HOM05D006050 ORTHO05D007457 8.8e-48 195.7 250 47.2
Gohir.D10G040800 Gossypium hirsutum HOM05D006050 ORTHO05D007457 2.6e-47 194.1 192 53.1
BcaNung05669 Brassica carinata HOM05D006050 ORTHO05D007457 4.4e-47 193.4 166 63.3
Gohir.A10G040000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.3e-46 191.8 192 52.6
PGSC0003DMG402021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 6.3e-46 189.5 185 54.1
CARHR225070 Cardamine hirsuta HOM05D006050 ORTHO05D007457 6.1e-41 172.9 269 42.0
PRCOL_00000982 Prasinoderma coloniale HOM05D006050 ORTHO05D007457 1.0e-40 172.2 326 36.2
Cpa.g.sc166.18 Carica papaya HOM05D006050 ORTHO05D007457 1.1e-39 168.7 106 81.1
FAN11G0378 Fragaria x ananassa HOM05D006050 ORTHO05D007457 2.0e-39 167.9 144 57.6
SEGI_21633 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 5.3e-37 159.8 151 54.3
MCO07G478 Micromonas commoda HOM05D006050 ORTHO05D007457 1.5e-34 151.8 366 34.4
DCAR_029765 Daucus carota HOM05D006050 ORTHO05D007457 2.5e-34 151.0 171 51.5
SEGI_20862 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 3.2e-34 150.6 123 60.2
unitig_32.g11518 Utricularia gibba HOM05D006050 ORTHO05D007457 2.7e-33 147.5 246 38.2
Pp3c6_19460 Physcomitrium patens HOM05D006050 ORTHO05D007457 5.2e-32 143.3 171 43.9
AUR62030212 Chenopodium quinoa HOM05D006050 ORTHO05D007457 5.9e-28 129.8 144 50.7
Sopen02g019650 Solanum pennellii HOM05D006050 ORTHO05D007457 7.2e-26 122.9 276 31.5
Mapoly0042s0029 Marchantia polymorpha HOM05D006050 ORTHO05D007457 6.1e-25 119.8 154 42.2
PSO063G2775 Papaver somniferum HOM05D006050 ORTHO05D007457 1.0e-24 119.0 104 63.5
CSS0017405 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 6.3e-22 109.8 73 75.3
Cpa.g.sc166.16 Carica papaya HOM05D006050 ORTHO05D007457 8.0e-17 92.8 76 57.9
CSS0043541 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 7.5e-15 86.3 59 74.6
DCAR_011844 Daucus carota HOM05D006050 ORTHO05D007457 3.7e-14 84.0 89 52.8
CSS0038270 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 9.5e-10 69.3 70 54.3
COL.COLO4_31088 Corchorus olitorius HOM05D006050 ORTHO05D007457 1.2e-09 68.9 61 59.0
Os01g0210800 Oryza sativa ssp. japonica HOM05D006050 ORTHO05D007457 6.4e-06 56.6 114 36.8


User provided reference genes

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