Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 1.1e-186 656.4 317 100.0
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 2.3e-155 552.4 317 81.7
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 2.0e-154 549.3 318 83.3
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 4.8e-153 544.7 318 84.0
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 2.4e-152 542.3 319 82.1
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 8.0e-148 527.3 319 78.4
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 2.8e-145 518.8 317 77.9
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 2.0e-143 512.7 289 83.4
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 1.9e-133 479.6 314 73.6
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 1.8e-131 473.0 318 72.6
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 2.3e-131 472.6 318 72.6
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 1.1e-120 437.2 321 65.7
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 1.1e-120 437.2 317 68.5
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 6.0e-119 431.4 317 65.0
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 7.8e-119 431.0 319 64.6
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.6e-116 423.3 319 64.6
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 1.6e-116 423.3 317 65.6
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 2.8e-116 422.5 317 63.1
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.3e-115 419.5 319 64.3
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 4.0e-115 418.7 318 65.4
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 2.0e-114 416.4 319 64.3
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 2.6e-114 416.0 317 64.0
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 3.4e-114 415.6 317 65.0
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 3.4e-114 415.6 317 63.7
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 4.4e-114 415.2 317 64.0
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 1.7e-113 413.3 323 64.1
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 6.4e-113 411.4 319 62.7
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 8.3e-113 411.0 319 63.0
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 1.1e-112 410.6 335 61.2
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 3.2e-112 409.1 354 58.5
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 2.1e-111 406.4 324 60.8
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 2.7e-111 406.0 324 62.0
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 6.0e-111 404.8 320 62.8
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 1.0e-110 404.1 322 61.5
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 1.3e-110 403.7 317 62.1
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.0e-110 402.5 315 60.3
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 6.6e-110 401.4 320 62.5
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 6.6e-110 401.4 317 61.2
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 1.6e-108 396.7 320 59.7
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 2.8e-108 396.0 319 60.5
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 6.2e-108 394.8 320 61.9
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.1e-107 394.0 319 60.2
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 1.1e-107 394.0 317 64.0
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 5.2e-107 391.7 317 60.3
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 6.8e-107 391.3 317 59.9
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 1.2e-106 390.6 320 59.7
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 1.5e-106 390.2 319 60.5
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 2.0e-106 389.8 320 60.3
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 2.0e-106 389.8 318 59.7
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 3.4e-106 389.0 322 60.9
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 9.9e-106 387.5 319 60.2
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 2.9e-105 386.0 330 58.8
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 1.4e-104 383.6 315 59.7
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 3.2e-104 382.5 322 59.0
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 3.2e-104 382.5 317 58.7
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 4.1e-104 382.1 317 59.3
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 4.1e-104 382.1 319 59.9
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 5.4e-104 381.7 317 61.8
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 1.2e-103 380.6 317 59.6
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 1.2e-103 380.6 317 59.3
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 1.6e-103 380.2 318 58.8
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 2.1e-103 379.8 319 59.9
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 2.7e-103 379.4 319 59.2
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 3.5e-103 379.0 317 59.6
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 3.5e-103 379.0 317 58.7
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 4.6e-103 378.6 275 67.6
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 6.0e-103 378.3 317 59.6
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 1.0e-102 377.5 317 59.3
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 1.7e-102 376.7 317 59.6
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.7e-102 376.7 317 58.4
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 4.3e-101 372.1 319 58.3
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 5.6e-101 371.7 319 58.6
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 5.6e-101 371.7 324 57.4
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 1.2e-100 370.5 317 57.7
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 4.7e-100 368.6 323 57.6
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 1.8e-99 366.7 327 56.9
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 5.8e-98 361.7 327 55.0
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.7e-97 360.1 322 57.1
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 2.2e-97 359.8 319 56.7
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 9.3e-96 354.4 369 51.2
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 3.9e-94 349.0 317 57.4
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 1.9e-93 346.7 256 64.5
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 2.8e-92 342.8 241 68.0
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 6.2e-92 341.7 319 55.5
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 6.4e-89 331.6 243 63.4
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 7.1e-88 328.2 332 53.6
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 1.3e-86 323.9 240 65.4
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.3e-86 323.9 326 53.1
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 2.5e-85 319.7 240 64.2
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 4.3e-85 318.9 330 50.3
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 6.2e-84 315.1 325 52.0
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 1.1e-83 314.3 331 52.3
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 7.6e-82 308.1 318 52.2
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 2.5e-77 293.1 319 50.5
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 7.4e-77 291.6 208 66.3
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 2.8e-76 289.7 318 48.4
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 2.8e-76 289.7 321 48.3
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 2.4e-75 286.6 315 48.3
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 1.7e-73 280.4 174 81.0
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 2.5e-72 276.6 247 53.0
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 7.1e-72 275.0 249 57.8
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 3.5e-71 272.7 323 49.5
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 4.6e-71 272.3 186 66.7
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 2.1e-68 263.5 325 46.8
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 2.4e-67 260.0 276 52.2
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 7.6e-66 255.0 227 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 2.9e-65 253.1 230 54.8
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.2e-63 247.7 174 70.1
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 6.3e-60 235.3 173 61.8
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 3.8e-57 226.1 216 52.3
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 1.1e-53 214.5 161 63.4
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.3e-53 213.0 317 39.7
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 8.5e-49 198.4 126 72.2
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 6.1e-47 192.2 115 80.0
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.1e-45 188.0 142 58.5
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 1.1e-40 171.4 150 62.0
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.5e-40 170.2 223 41.3
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 2.1e-39 167.2 235 42.6
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 2.6e-37 160.2 236 38.6
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 2.6e-37 160.2 142 53.5
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 4.4e-37 159.5 491 27.5
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 5.5e-32 142.5 248 35.1
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 6.8e-30 135.6 173 43.9
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 4.9e-20 102.8 58 81.0
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 1.6e-18 97.8 61 72.1
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 2.0e-18 97.4 67 58.2
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 2.9e-17 93.6 47 83.0
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 2.3e-14 84.0 51 70.6
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 2.9e-12 77.0 53 64.2
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 1.9e-08 64.3 36 75.0
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 4.7e-07 59.7 31 83.9
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.4e-06 58.2 36 66.7
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 3.1e-06 57.0 40 67.5
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 8.9e-06 55.5 42 59.5


User provided reference genes

Program Settings