Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00529_v3 Cicer arietinum L. HOM05D004454 ORTHO05D005462 1.4e-267 926.0 578 100.0
Ca_26268_v3 Cicer arietinum L. HOM05D004454 ORTHO05D005462 6.3e-260 900.6 578 94.1
TPR.G25821 Trifolium pratense HOM05D004454 ORTHO05D005462 4.7e-247 857.8 578 87.0
Glyma.11G026400 Glycine max HOM05D004454 ORTHO05D005462 1.7e-241 839.3 578 84.6
Lalb_Chr19g0133161 Lupinus albus HOM05D004454 ORTHO05D005462 5.6e-240 834.3 577 87.0
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 6.2e-239 830.9 580 84.8
Lalb_Chr03g0031901 Lupinus albus HOM05D004454 ORTHO05D005462 1.5e-237 826.2 577 86.1
Psat4g146120 Pisum sativum HOM05D004454 ORTHO05D005462 1.5e-237 826.2 578 83.2
VMungo1215G3435 Vigna mungo HOM05D004454 ORTHO05D005462 3.4e-237 825.1 577 83.9
Lj3g0012006 Lotus japonicus HOM05D004454 ORTHO05D005462 9.8e-237 823.5 577 83.4
Medtr8g021140 Medicago truncatula HOM05D004454 ORTHO05D005462 2.4e-235 818.9 577 84.6
Phvul.002G154200 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 2.4e-235 818.9 577 83.0
QL10p013674 Quercus lobata HOM05D004454 ORTHO05D005462 4.0e-230 801.6 577 80.6
MELO3C002234.2 Cucumis melo HOM05D004454 ORTHO05D005462 3.7e-228 795.0 578 80.3
CsaV3_1G008170 Cucumis sativus L. HOM05D004454 ORTHO05D005462 4.9e-228 794.7 578 80.3
Cfa019062 Carpinus fangiana HOM05D004454 ORTHO05D005462 1.1e-227 793.5 578 81.1
ClCG01G014140 Citrullus lanatus HOM05D004454 ORTHO05D005462 4.1e-227 791.6 578 80.4
Haze_07431 Corylus avellana HOM05D004454 ORTHO05D005462 4.1e-227 791.6 578 80.3
Manes.14G071000 Manihot esculenta HOM05D004454 ORTHO05D005462 9.2e-227 790.4 578 80.1
Sed0026284 Sechium edule HOM05D004454 ORTHO05D005462 1.6e-226 789.6 578 80.6
TWI60G0736 Tripterygium wilfordii HOM05D004454 ORTHO05D005462 1.6e-226 789.6 578 81.5
Duzib084G0805 Durio zibethinus HOM05D004454 ORTHO05D005462 2.7e-226 788.9 578 82.5
Nn4g22938 Nelumbo nucifera HOM05D004454 ORTHO05D005462 7.8e-226 787.3 578 83.0
QL02p081076 Quercus lobata HOM05D004454 ORTHO05D005462 2.3e-225 785.8 620 75.3
QL10p027831 Quercus lobata HOM05D004454 ORTHO05D005462 2.3e-225 785.8 620 75.3
Ciclev10019469m.g Citrus clementina HOM05D004454 ORTHO05D005462 5.6e-224 781.2 578 82.4
CSS0019873 Camellia sinensis var. sinensis HOM05D004454 ORTHO05D005462 4.7e-223 778.1 579 80.0
CSS0024488 Camellia sinensis var. sinensis HOM05D004454 ORTHO05D005462 4.7e-223 778.1 579 80.0
Prupe.5G180200 Prunus persica HOM05D004454 ORTHO05D005462 4.7e-223 778.1 578 78.9
Actinidia19078 Actinidia chinensis HOM05D004454 ORTHO05D005462 8.1e-223 777.3 579 82.2
Hma1.2p1_0002F.1_g002910 Hydrangea macrophylla HOM05D004454 ORTHO05D005462 8.1e-223 777.3 579 79.3
Thecc.03G002900 Theobroma cacao HOM05D004454 ORTHO05D005462 1.1e-222 776.9 578 82.0
Gorai.011G255100 Gossypium raimondii HOM05D004454 ORTHO05D005462 1.4e-222 776.5 578 81.5
Dinv02657 Davidia involucrata HOM05D004454 ORTHO05D005462 2.3e-222 775.8 579 79.6
Gohir.A10G215100 Gossypium hirsutum HOM05D004454 ORTHO05D005462 1.2e-221 773.5 578 81.3
Gohir.D10G224100 Gossypium hirsutum HOM05D004454 ORTHO05D005462 1.5e-221 773.1 578 81.3
Eucgr.B00321 Eucalyptus grandis HOM05D004454 ORTHO05D005462 4.4e-221 771.5 578 79.1
MD14G1188000 Malus domestica HOM05D004454 ORTHO05D005462 5.8e-221 771.2 579 79.1
MD06G1182000 Malus domestica HOM05D004454 ORTHO05D005462 2.2e-220 769.2 579 78.8
Eucgr.B00957 Eucalyptus grandis HOM05D004454 ORTHO05D005462 8.4e-220 767.3 578 81.0
TAR374G1062 Trochodendron aralioides HOM05D004454 ORTHO05D005462 1.4e-219 766.5 578 78.2
Lj9A454G67 Lonicera japonica HOM05D004454 ORTHO05D005462 5.4e-219 764.6 580 77.9
Potri.012G075000 Populus trichocarpa HOM05D004454 ORTHO05D005462 7.1e-219 764.2 578 80.8
Rhsim12G0161100 Rhododendron simsii HOM05D004454 ORTHO05D005462 9.2e-219 763.8 582 78.2
Cpa.g.sc35.32 Carica papaya HOM05D004454 ORTHO05D005462 2.3e-217 759.2 579 77.9
Sabra12G0053400 Salix brachista HOM05D004454 ORTHO05D005462 1.9e-216 756.1 578 79.9
Glyma.12G016100 Glycine max HOM05D004454 ORTHO05D005462 4.3e-216 755.0 561 79.7
vmacro16584 Vaccinium macrocarpon HOM05D004454 ORTHO05D005462 1.1e-214 750.4 604 77.2
RcHm_v2.0_Chr7g0179821 Rosa chinensis HOM05D004454 ORTHO05D005462 1.2e-213 746.9 578 74.7
arahy.Tifrunner.gnm1.ann1.AQXS59 Arachis hypogaea HOM05D004454 ORTHO05D005462 1.5e-213 746.5 578 84.8
Solyc03g113740.4 Solanum lycopersicum HOM05D004454 ORTHO05D005462 1.3e-212 743.4 583 76.5
Sopen03g032790 Solanum pennellii HOM05D004454 ORTHO05D005462 1.3e-212 743.4 583 76.5
Nn3g17037 Nelumbo nucifera HOM05D004454 ORTHO05D005462 1.1e-211 740.3 551 78.9
DCAR_026102 Daucus carota HOM05D004454 ORTHO05D005462 1.4e-211 740.0 578 77.9
Oeu016330.1 Olea europaea HOM05D004454 ORTHO05D005462 7.1e-211 737.6 583 76.2
FAN04G1717 Fragaria x ananassa HOM05D004454 ORTHO05D005462 1.2e-210 736.9 578 74.2
FAN13G0079 Fragaria x ananassa HOM05D004454 ORTHO05D005462 3.5e-210 735.3 578 74.2
FvH4_5g16310 Fragaria vesca HOM05D004454 ORTHO05D005462 7.8e-210 734.2 578 74.0
PSO832G1188 Papaver somniferum HOM05D004454 ORTHO05D005462 1.7e-209 733.0 582 75.9
FAN18G3350 Fragaria x ananassa HOM05D004454 ORTHO05D005462 3.0e-209 732.3 578 73.9
SalBow5G4570 Salvia bowleyana HOM05D004454 ORTHO05D005462 3.9e-209 731.9 586 75.3
PSO013G0161 Papaver somniferum HOM05D004454 ORTHO05D005462 5.1e-209 731.5 582 75.4
FAN08G3623 Fragaria x ananassa HOM05D004454 ORTHO05D005462 8.7e-209 730.7 578 74.0
CAN.G853.25 Capsicum annuum HOM05D004454 ORTHO05D005462 1.9e-208 729.6 583 76.2
MSTRG.9661 Avicennia marina HOM05D004454 ORTHO05D005462 5.6e-208 728.0 586 74.9
Peaxi162Scf00017g02211 Petunia axillaris HOM05D004454 ORTHO05D005462 2.1e-207 726.1 593 74.5
Migut.I00064 Erythranthe guttata HOM05D004454 ORTHO05D005462 6.2e-207 724.5 586 74.2
SGA_v2.0_scaffold467G52036 Striga asiatica HOM05D004454 ORTHO05D005462 9.9e-205 717.2 603 72.6
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 1.3e-201 706.8 571 72.9
MBI04_g34104_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 1.1e-200 703.7 588 72.1
ECA246G3380 Erigeron canadensis HOM05D004454 ORTHO05D005462 1.9e-200 703.0 583 72.0
Sp5g13890 Schrenkiella parvula HOM05D004454 ORTHO05D005462 5.6e-200 701.4 577 72.1
AL5G27480 Arabidopsis lyrata HOM05D004454 ORTHO05D005462 9.6e-200 700.7 577 71.9
Thhalv10010239m.g Eutrema salsugineum HOM05D004454 ORTHO05D005462 4.8e-199 698.4 577 71.8
Nitab4.5_0000026g0380 Nicotiana tabacum HOM05D004454 ORTHO05D005462 8.1e-199 697.6 588 72.1
Carub.0005s1425 Capsella rubella HOM05D004454 ORTHO05D005462 1.8e-198 696.4 577 71.9
AT3G48150 Arabidopsis thaliana HOM05D004454 ORTHO05D005462 1.5e-197 693.3 577 71.2
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 3.4e-197 692.2 566 73.0
A06p19550 Brassica napus HOM05D004454 ORTHO05D005462 2.2e-196 689.5 577 70.9
BraA06t25035Z Brassica rapa HOM05D004454 ORTHO05D005462 2.2e-196 689.5 577 70.9
Nitab4.5_0003577g0020 Nicotiana tabacum HOM05D004454 ORTHO05D005462 2.2e-196 689.5 588 71.8
BcaB05g22913 Brassica carinata HOM05D004454 ORTHO05D005462 2.9e-196 689.1 578 70.8
C01p31930 Brassica napus HOM05D004454 ORTHO05D005462 6.4e-196 688.0 578 70.9
BcaC09g49851 Brassica carinata HOM05D004454 ORTHO05D005462 8.4e-196 687.6 578 70.8
A01p25460 Brassica napus HOM05D004454 ORTHO05D005462 1.1e-195 687.2 577 72.1
BraA01t02468Z Brassica rapa HOM05D004454 ORTHO05D005462 1.4e-195 686.8 577 72.1
C08p23030 Brassica napus HOM05D004454 ORTHO05D005462 1.9e-195 686.4 577 70.7
BolC8t49941H Brassica oleracea HOM05D004454 ORTHO05D005462 1.9e-195 686.4 577 70.7
BcaC07g39296 Brassica carinata HOM05D004454 ORTHO05D005462 3.2e-195 685.6 577 70.7
BolC1t03163H Brassica oleracea HOM05D004454 ORTHO05D005462 3.2e-195 685.6 578 70.8
BcaB01g00842 Brassica carinata HOM05D004454 ORTHO05D005462 1.6e-194 683.3 577 70.7
THA.LOC104799671 Tarenaya hassleriana HOM05D004454 ORTHO05D005462 3.0e-193 679.1 591 69.2
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 6.7e-193 677.9 568 71.0
Aqoxy3G03142 Aquilegia oxysepala HOM05D004454 ORTHO05D005462 4.3e-192 675.2 580 68.8
PGSC0003DMG400024579 Solanum tuberosum HOM05D004454 ORTHO05D005462 8.1e-191 671.0 583 71.7
Sc04g0002160 Simmondsia chinensis HOM05D004454 ORTHO05D005462 1.0e-188 664.1 546 73.1
Ciclev10004829m.g Citrus clementina HOM05D004454 ORTHO05D005462 4.9e-188 661.8 496 79.6
GSVIVG01000277001 Vitis vinifera HOM05D004454 ORTHO05D005462 4.9e-188 661.8 578 63.5
Cc04_g15930 Coffea canephora HOM05D004454 ORTHO05D005462 1.1e-187 660.6 587 70.0
Phvul.007G021500 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 2.7e-186 656.0 495 81.0
unitig_0.g2210 Utricularia gibba HOM05D004454 ORTHO05D005462 1.3e-185 653.7 595 69.6
Aa31LG4G16750 Aethionema arabicum HOM05D004454 ORTHO05D005462 1.1e-184 650.6 550 71.8
MD13G1029000 Malus domestica HOM05D004454 ORTHO05D005462 5.7e-184 648.3 496 79.2
MBI01_g40850_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 7.6e-181 637.9 541 61.2
ATR0057G034 Amborella trichopoda HOM05D004454 ORTHO05D005462 5.0e-180 635.2 579 67.4
SHI46877 Sapria himalayana HOM05D004454 ORTHO05D005462 1.6e-178 630.2 529 73.3
DCAR_031479 Daucus carota HOM05D004454 ORTHO05D005462 9.7e-176 620.9 639 62.6
AUR62008292 Chenopodium quinoa HOM05D004454 ORTHO05D005462 5.3e-174 615.1 578 71.8
Ah.11g046280 Amaranthus hybridus HOM05D004454 ORTHO05D005462 1.1e-171 607.4 578 70.9
Zm00001eb249420 Zea mays HOM05D004454 ORTHO05D005462 2.7e-170 602.8 595 63.0
Os02g0656300 Oryza sativa ssp. japonica HOM05D004454 ORTHO05D005462 3.9e-169 599.0 593 64.6
AUR62031054 Chenopodium quinoa HOM05D004454 ORTHO05D005462 3.3e-168 595.9 578 70.8
Hund02707 Selenicereus undatus HOM05D004454 ORTHO05D005462 7.4e-168 594.7 565 72.2
GSVIVG01022319001 Vitis vinifera HOM05D004454 ORTHO05D005462 1.4e-163 580.5 578 58.3
MBI01_g33693_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 7.2e-163 578.2 588 54.9
Glyma.01G216500 Glycine max HOM05D004454 ORTHO05D005462 2.1e-162 576.6 437 81.9
EL10Ac5g10847 Beta vulgaris HOM05D004454 ORTHO05D005462 3.0e-161 572.8 688 60.9
HPP92_012132 Vanilla planifolia HOM05D004454 ORTHO05D005462 5.2e-161 572.0 610 59.8
CiPaw.12G022700 Carya illinoinensis HOM05D004454 ORTHO05D005462 8.2e-159 564.7 438 79.0
CDE04G0088 Ceratophyllum demersum HOM05D004454 ORTHO05D005462 1.0e-156 557.8 566 54.4
Actinidia34963 Actinidia chinensis HOM05D004454 ORTHO05D005462 2.2e-156 556.6 438 82.2
Eucgr.B00325 Eucalyptus grandis HOM05D004454 ORTHO05D005462 6.1e-154 548.5 465 76.6
TAR629G2352 Trochodendron aralioides HOM05D004454 ORTHO05D005462 1.0e-153 547.7 438 77.2
SEGI_02939 Sequoiadendron giganteum HOM05D004454 ORTHO05D005462 1.1e-142 511.1 603 56.9
arahy.Tifrunner.gnm1.ann1.7D20F1 Arachis hypogaea HOM05D004454 ORTHO05D005462 2.7e-141 506.5 455 81.1
CARHR156870 Cardamine hirsuta HOM05D004454 ORTHO05D005462 4.9e-135 485.7 444 69.4
Mapoly0091s0003 Marchantia polymorpha HOM05D004454 ORTHO05D005462 6.6e-132 475.3 575 56.2
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 9.2e-126 454.9 560 56.8
Pp3c11_17870 Physcomitrium patens HOM05D004454 ORTHO05D005462 5.9e-125 452.2 574 54.5
SMO147G0289 Selaginella moellendorffii HOM05D004454 ORTHO05D005462 2.2e-119 433.7 478 60.5
CBR_g45228 Chara braunii HOM05D004454 ORTHO05D005462 2.5e-107 393.7 478 61.1
CDE12G0785 Ceratophyllum demersum HOM05D004454 ORTHO05D005462 1.3e-103 381.3 411 51.6
MD17G1271900 Malus domestica HOM05D004454 ORTHO05D005462 9.2e-102 375.2 292 67.8
Medtr8g447330 Medicago truncatula HOM05D004454 ORTHO05D005462 5.4e-86 322.8 548 40.7
COL.COLO4_21447 Corchorus olitorius HOM05D000359 ORTHO05D000251 9.3e-86 322.0 549 43.2
Atru.chr9.2395 Acer truncatum HOM05D004454 ORTHO05D005462 1.7e-79 301.2 197 77.7
MCO11G723 Micromonas commoda HOM05D004454 ORTHO05D005462 2.2e-79 300.8 589 43.6
Cre16.g681578 Chlamydomonas reinhardtii HOM05D004454 ORTHO05D005462 1.5e-64 251.5 641 39.3
Glyma.01G216550 Glycine max HOM05D004454 ORTHO05D005462 3.9e-60 236.9 131 90.1
Dinv13132 Davidia involucrata HOM05D004454 ORTHO05D005462 5.7e-59 233.0 243 76.5
Atru.chr9.2393 Acer truncatum HOM05D004454 ORTHO05D005462 2.0e-51 208.0 128 75.8
MD17G1272000 Malus domestica HOM05D004454 ORTHO05D005462 4.1e-49 200.3 123 76.4
Os06g0679100 Oryza sativa ssp. japonica HOM05D004454 ORTHO05D005462 5.5e-46 189.9 127 68.5
Atru.chr9.2394 Acer truncatum HOM05D004454 ORTHO05D005462 1.4e-41 175.3 121 75.2
Cfa023754 Carpinus fangiana HOM05D004454 ORTHO05D005462 2.6e-40 171.0 420 30.0
COL.COLO4_19778 Corchorus olitorius HOM05D004454 ORTHO05D005462 1.2e-35 155.6 129 62.8
Dinv13133 Davidia involucrata HOM05D004454 ORTHO05D005462 5.7e-35 153.3 99 79.8
FAN21G3202 Fragaria x ananassa HOM05D004454 ORTHO05D035857 4.5e-32 143.7 118 61.0
Glyma.11G109202 Glycine max HOM05D004454 ORTHO05D005462 5.9e-32 143.3 99 76.8
TAR629G2581 Trochodendron aralioides HOM05D004454 ORTHO05D005462 1.9e-30 138.3 98 72.4
FAN24G1390 Fragaria x ananassa HOM05D004454 ORTHO05D035857 2.5e-30 137.9 115 60.0
COL.COLO4_19780 Corchorus olitorius HOM05D004454 ORTHO05D005462 6.8e-28 129.8 105 68.6
FAN22G0042 Fragaria x ananassa HOM05D004454 ORTHO05D005462 1.1e-25 122.5 288 34.0
Gohir.A01G024750 Gossypium hirsutum HOM05D004454 ORTHO05D005462 3.8e-23 114.0 69 78.3
AL7G40930 Arabidopsis lyrata HOM05D001017 ORTHO05D005462 2.1e-21 108.2 94 59.6
AL6G31880 Arabidopsis lyrata HOM05D001017 ORTHO05D005462 5.2e-20 103.6 92 59.8
MBI01_g40849_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D000030 9.8e-19 99.4 125 44.8
AL5G10850 Arabidopsis lyrata HOM05D001017 ORTHO05D005462 2.8e-18 97.8 128 46.9
ATR0767G023 Amborella trichopoda HOM05D004454 ORTHO05D005462 2.9e-15 87.8 60 73.3
FAN16G3295 Fragaria x ananassa HOM05D004454 ORTHO05D035857 5.0e-15 87.0 152 38.8
ATR0767G108 Amborella trichopoda HOM05D004454 ORTHO05D005462 1.2e-11 75.9 129 34.9
FAN07G2835 Fragaria x ananassa HOM05D004454 ORTHO05D035852 1.3e-10 72.4 93 44.1
ATR0767G252 Amborella trichopoda HOM05D004454 ORTHO05D063599 1.2e-08 65.9 65 50.8
FAN21G0120 Fragaria x ananassa HOM05D004454 ORTHO05D035852 1.2e-08 65.9 93 40.9
CBR_g102 Chara braunii HOM05D003301 ORTHO05D003665 6.6e-07 60.1 106 30.2
BcaB06g25725 Brassica carinata HOM05D003301 ORTHO05D003665 1.9e-06 58.5 135 28.1
AagrBONN_evm.TU.Sc2ySwM_117.2748 Anthoceros agrestis HOM05D003301 ORTHO05D003665 2.5e-06 58.2 135 28.1
Thhalv10021943m.g Eutrema salsugineum HOM05D003301 ORTHO05D003665 4.3e-06 57.4 152 27.0
Gohir.A13G196000 Gossypium hirsutum HOM05D003301 ORTHO05D003665 5.6e-06 57.0 106 29.2
Gohir.D03G058800 Gossypium hirsutum HOM05D003301 ORTHO05D003665 5.6e-06 57.0 135 28.1
Gohir.D13G201100 Gossypium hirsutum HOM05D003301 ORTHO05D003665 5.6e-06 57.0 106 29.2
Gorai.013G229900 Gossypium raimondii HOM05D003301 ORTHO05D003665 5.6e-06 57.0 106 29.2
Sp3g14690 Schrenkiella parvula HOM05D003301 ORTHO05D003665 5.6e-06 57.0 150 24.7
THA.LOC104810537 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 5.6e-06 57.0 152 27.0
Aa31LG8G3460 Aethionema arabicum HOM05D003301 ORTHO05D003665 7.3e-06 56.6 152 26.3
BcaC05g28893 Brassica carinata HOM05D003301 ORTHO05D003665 9.5e-06 56.2 135 28.1
BolC5t33768H Brassica oleracea HOM05D003301 ORTHO05D003665 9.5e-06 56.2 135 28.1
Gohir.A02G118200 Gossypium hirsutum HOM05D003301 ORTHO05D003665 9.5e-06 56.2 135 28.1
Gorai.003G062700 Gossypium raimondii HOM05D003301 ORTHO05D003665 9.5e-06 56.2 135 28.1


User provided reference genes

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