Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 3.0e-160 568.5 300 100.0
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 2.5e-127 459.1 300 84.3
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 1.2e-121 440.3 296 82.8
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 1.2e-116 423.7 300 78.7
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 6.7e-112 407.9 303 73.3
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 1.1e-109 400.6 303 71.9
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 9.3e-106 387.5 305 71.1
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 4.1e-101 372.1 299 69.2
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 2.9e-99 365.9 301 68.1
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 6.5e-99 364.8 303 67.0
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 2.5e-98 362.8 301 66.1
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 3.2e-98 362.5 302 67.2
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 5.9e-84 315.1 298 56.7
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 9.4e-82 307.8 305 59.3
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 1.2e-81 307.4 305 59.3
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 1.1e-77 294.3 298 55.7
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 3.1e-77 292.7 306 55.2
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 5.3e-77 292.0 301 55.1
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 7.7e-76 288.1 300 54.7
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 7.7e-76 288.1 295 52.5
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 2.7e-73 279.6 300 53.3
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 3.6e-73 279.3 292 55.1
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 5.2e-72 275.4 301 52.5
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 2.0e-71 273.5 295 53.2
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 2.6e-71 273.1 295 51.9
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 7.5e-71 271.6 298 51.3
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.7e-70 269.2 298 52.3
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 6.3e-70 268.5 299 51.5
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 1.1e-69 267.7 297 51.9
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 1.4e-69 267.3 303 52.1
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.4e-69 267.3 297 51.9
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 9.1e-69 264.6 301 53.8
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 3.5e-68 262.7 303 52.5
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.5e-68 262.3 303 52.5
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.3e-67 260.8 303 52.1
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 3.8e-67 259.2 303 52.1
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 6.5e-67 258.5 303 50.8
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 6.5e-67 258.5 299 51.5
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 6.5e-67 258.5 296 50.7
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.1e-66 257.7 303 51.8
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.5e-66 256.5 293 50.5
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 2.5e-66 256.5 292 51.4
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 3.2e-66 256.1 292 49.0
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 9.4e-66 254.6 286 50.0
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 1.2e-65 254.2 302 51.3
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 1.6e-65 253.8 308 47.7
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 6.1e-65 251.9 286 50.0
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 8.0e-65 251.5 303 50.8
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.4e-64 250.8 292 48.3
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 1.4e-64 250.8 292 48.3
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 4.0e-64 249.2 303 49.2
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.3e-62 244.2 302 49.3
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 2.8e-62 243.0 299 46.2
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 6.3e-62 241.9 304 48.4
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.4e-61 240.0 293 48.1
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 2.4e-61 240.0 330 45.8
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 9.2e-61 238.0 286 51.0
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.6e-60 237.3 286 50.7
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 3.5e-60 236.1 311 47.6
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 3.5e-60 236.1 309 46.3
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 4.5e-60 235.7 303 46.5
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 1.7e-59 233.8 309 45.3
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.7e-59 233.8 284 46.1
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 6.6e-59 231.9 303 46.9
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 6.6e-59 231.9 293 46.8
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 5.6e-58 228.8 310 46.8
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 7.3e-58 228.4 303 45.9
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 9.5e-58 228.0 310 45.8
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 9.5e-58 228.0 310 45.8
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.2e-57 227.6 284 45.8
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 1.6e-57 227.3 309 47.9
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 6.1e-57 225.3 310 45.2
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 8.0e-57 224.9 312 46.2
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.4e-56 224.2 291 48.1
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.8e-56 223.8 299 46.5
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 4.0e-56 222.6 308 45.8
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 5.2e-56 222.2 310 44.5
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 5.2e-56 222.2 310 45.2
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 5.2e-56 222.2 299 46.5
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 6.8e-56 221.9 310 45.2
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 6.8e-56 221.9 280 48.6
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 1.2e-55 221.1 314 46.5
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 1.5e-55 220.7 309 45.3
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 2.0e-55 220.3 279 45.2
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 5.7e-55 218.8 300 46.0
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 5.7e-55 218.8 310 45.2
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 5.7e-55 218.8 310 45.2
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 7.5e-55 218.4 300 44.7
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 7.5e-55 218.4 254 48.8
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.3e-54 217.6 299 44.1
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 8.3e-54 214.9 306 44.8
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.4e-53 213.4 325 42.8
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.4e-53 213.4 325 42.8
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 4.1e-53 212.6 312 43.9
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 4.1e-53 212.6 283 45.2
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 1.2e-52 211.1 289 44.6
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.6e-52 210.7 294 42.2
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 1.6e-52 210.7 296 45.6
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 2.0e-52 210.3 298 45.0
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 1.0e-51 208.0 293 42.7
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 2.1e-49 200.3 286 42.7
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 2.8e-49 199.9 278 44.2
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 4.7e-49 199.1 291 43.6
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 1.8e-48 197.2 303 43.6
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.3e-48 196.8 244 46.3
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 4.0e-48 196.1 278 43.2
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 6.8e-48 195.3 279 44.4
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 3.4e-47 193.0 320 43.8
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 1.3e-46 191.0 309 41.1
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 2.9e-46 189.9 278 42.8
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 3.7e-46 189.5 265 44.2
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 6.4e-46 188.7 281 42.3
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 1.9e-45 187.2 268 46.3
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.4e-45 186.8 264 42.0
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 2.7e-44 183.3 262 45.8
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 2.3e-43 180.3 198 54.0
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 6.6e-43 178.7 309 39.2
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 1.6e-41 174.1 288 42.7
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 5.1e-35 152.5 307 37.1
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 8.4e-30 135.2 159 52.2
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 6.2e-25 119.0 242 34.3
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 3.1e-24 116.7 259 34.4
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 9.9e-23 111.7 136 50.0
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 7.8e-20 102.1 173 40.5
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 4.5e-15 86.3 232 31.9
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 2.4e-13 80.5 115 40.9
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 2.1e-12 77.4 103 47.6
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.4e-08 63.9 163 30.7
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 3.1e-08 63.5 86 43.0


User provided reference genes

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