Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 1.7e-269 932.2 501 100.0
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 8.3e-224 780.4 501 81.4
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 1.0e-213 746.9 505 77.6
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 7.1e-191 671.0 506 71.5
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 2.1e-190 669.5 546 68.1
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 2.6e-185 652.5 544 66.4
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 2.3e-181 639.4 508 69.5
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 1.3e-176 623.6 527 65.3
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.1e-175 620.5 519 65.9
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 1.1e-172 610.5 447 71.6
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 7.3e-172 607.8 494 65.6
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 3.8e-168 595.5 505 63.2
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 6.0e-166 588.2 354 85.9
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 5.1e-157 558.5 546 56.4
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 1.1e-154 550.8 537 56.1
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 2.4e-154 549.7 535 55.7
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 5.3e-154 548.5 555 54.8
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 5.3e-154 548.5 494 64.8
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 2.2e-152 543.1 549 54.3
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 1.9e-151 540.0 553 55.3
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 7.1e-151 538.1 529 56.7
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 3.5e-150 535.8 547 53.9
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 3.9e-149 532.3 548 55.5
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 5.1e-149 531.9 540 54.3
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 6.7e-149 531.6 545 53.2
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.1e-148 530.8 535 54.0
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 1.5e-148 530.4 537 54.0
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.5e-148 530.4 537 54.0
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 3.7e-147 525.8 497 57.9
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 4.8e-147 525.4 540 54.1
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 1.4e-146 523.9 534 53.9
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 2.4e-146 523.1 551 53.7
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 1.2e-145 520.8 547 53.7
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.5e-145 520.4 539 54.7
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 1.5e-145 520.4 538 53.0
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 2.0e-145 520.0 545 52.5
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 2.0e-145 520.0 690 45.9
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 3.4e-145 519.2 558 53.0
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 1.3e-144 517.3 539 52.7
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.3e-144 517.3 552 52.9
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 8.5e-144 514.6 548 52.2
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 5.5e-143 511.9 524 55.3
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 7.9e-142 508.1 558 51.8
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 1.4e-141 507.3 542 52.2
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 3.9e-141 505.8 539 52.9
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 3.9e-141 505.8 537 52.3
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 5.1e-141 505.4 540 52.4
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 6.7e-141 505.0 546 52.4
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 2.5e-140 503.1 541 52.1
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 5.7e-140 501.9 504 55.4
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 3.7e-139 499.2 541 52.1
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 6.3e-139 498.4 541 51.9
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 1.1e-138 497.7 544 51.7
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 1.1e-138 497.7 504 55.2
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 1.8e-138 496.9 504 55.6
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 3.1e-138 496.1 437 60.0
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 5.9e-137 491.9 504 55.2
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 1.3e-136 490.7 547 51.2
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.5e-135 486.5 551 51.4
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 2.1e-134 483.4 540 50.9
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 1.0e-133 481.1 583 48.4
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 1.8e-133 480.3 540 51.1
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 5.7e-132 475.3 523 51.2
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.4e-130 470.7 500 54.2
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 1.4e-130 470.7 540 50.2
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 4.1e-130 469.2 540 50.2
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 9.1e-130 468.0 540 48.5
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 2.2e-128 463.4 575 47.0
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 6.5e-128 461.8 523 49.9
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 1.4e-127 460.7 541 48.6
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 1.9e-127 460.3 532 50.4
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 9.4e-127 458.0 523 49.1
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 6.1e-126 455.3 523 49.7
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 3.0e-125 453.0 517 49.3
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 3.9e-125 452.6 520 49.2
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 3.9e-125 452.6 520 49.2
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 3.9e-125 452.6 533 49.3
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 5.2e-125 452.2 523 49.1
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 5.2e-125 452.2 523 48.9
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 1.5e-124 450.7 328 74.4
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 4.4e-124 449.1 520 48.1
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 4.4e-124 449.1 521 49.1
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 5.7e-124 448.7 521 49.3
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 3.7e-123 446.0 543 47.7
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 1.8e-122 443.7 530 48.9
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 2.0e-121 440.3 523 48.2
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 2.6e-121 439.9 524 48.3
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.6e-121 439.9 541 49.4
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 4.5e-121 439.1 545 49.0
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 8.5e-120 434.9 434 53.0
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 7.0e-114 415.2 457 47.9
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 5.5e-111 405.6 540 45.6
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 3.6e-110 402.9 443 49.7
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 3.6e-110 402.9 527 46.3
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 3.0e-109 399.8 438 50.5
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 8.9e-101 371.7 425 47.1
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 4.1e-98 362.8 221 82.8
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 1.0e-88 331.6 378 52.4
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 8.6e-88 328.6 517 39.3
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 7.1e-82 308.9 550 38.2
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 1.1e-79 301.6 446 40.8
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.2e-75 287.3 281 55.5
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.2e-73 281.6 303 52.1
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 1.6e-73 281.2 548 35.4
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 6.0e-73 279.3 514 36.8
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.8e-70 270.4 343 46.9
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 4.0e-69 266.5 430 36.0
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 2.4e-66 257.3 421 38.2
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.2e-65 255.0 238 55.9
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.5e-63 247.3 277 50.5
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 7.3e-63 245.7 340 44.4
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 9.0e-61 238.8 265 48.7
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 7.6e-60 235.7 277 46.9
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 1.7e-59 234.6 408 36.3
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 4.6e-57 226.5 145 83.4
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.0e-56 223.8 166 65.1
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 1.1e-53 215.3 121 91.7
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.3e-53 213.0 161 65.2
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.2e-51 207.6 262 48.9
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 2.4e-45 187.6 156 62.2
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 2.0e-44 184.5 149 69.1
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 5.8e-44 183.0 336 37.5
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 8.4e-43 179.1 158 56.3
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 3.2e-42 177.2 263 42.6
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.4e-37 161.0 159 54.7
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.0e-36 157.9 122 66.4
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 3.4e-36 157.1 169 50.9
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 3.7e-30 137.1 122 64.8
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.2e-25 122.1 258 37.2
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.4e-16 92.0 239 34.7
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.1e-16 90.1 239 34.3
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 3.7e-14 84.0 95 50.5
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 3.7e-14 84.0 95 50.5
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 4.8e-14 83.6 107 50.5
Medtr8g007575 Medicago truncatula HOM05D005606 ORTHO05D006446 7.4e-07 59.7 57 63.2
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 2.2e-06 58.2 97 36.1
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 3.7e-06 57.4 81 35.8


User provided reference genes

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