Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 6.6e-114 414.1 213 100.0
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 6.6e-114 414.1 213 100.0
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 1.1e-87 327.0 213 81.7
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 5.3e-87 324.7 213 76.5
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 1.6e-83 313.2 215 78.1
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 1.2e-67 260.4 214 64.5
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 6.7e-66 254.6 215 65.6
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 1.3e-64 250.4 215 64.2
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 4.1e-63 245.4 215 62.3
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 8.8e-58 227.6 211 55.9
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 8.8e-58 227.6 211 55.5
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 8.5e-53 211.1 199 55.8
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 2.0e-46 189.9 201 52.2
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 3.8e-45 185.7 198 52.5
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 6.5e-45 184.9 194 53.1
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 1.9e-44 183.3 196 49.5
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 3.2e-44 182.6 177 53.7
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 9.4e-44 181.0 205 48.8
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 2.7e-43 179.5 182 52.2
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 1.0e-42 177.6 211 48.3
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 1.8e-42 176.8 204 48.5
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 3.0e-42 176.0 211 43.6
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 6.8e-42 174.9 203 47.3
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 1.5e-41 173.7 196 51.0
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 2.0e-41 173.3 183 49.7
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 4.4e-41 172.2 183 49.2
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 4.4e-41 172.2 181 50.8
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 4.4e-41 172.2 185 49.2
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 5.7e-41 171.8 214 46.3
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 7.5e-41 171.4 186 50.0
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 7.5e-41 171.4 183 49.2
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 9.8e-41 171.0 208 45.2
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 1.3e-40 170.6 205 44.9
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 2.2e-40 169.9 207 45.4
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 2.8e-40 169.5 199 46.7
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 3.7e-40 169.1 203 49.8
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 6.3e-40 168.3 208 47.1
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 1.4e-39 167.2 204 44.6
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 1.4e-39 167.2 202 47.0
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 2.4e-39 166.4 203 47.3
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 3.1e-39 166.0 192 47.9
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 9.1e-39 164.5 201 45.3
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 1.6e-38 163.7 200 45.0
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 2.0e-38 163.3 192 46.9
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 2.7e-38 162.9 195 43.1
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 2.7e-38 162.9 193 47.7
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 7.7e-38 161.4 202 44.1
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 7.7e-38 161.4 210 42.4
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 2.9e-37 159.5 211 44.5
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 5.0e-37 158.7 213 42.7
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 1.5e-36 157.1 207 43.5
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 4.2e-36 155.6 174 43.7
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 9.4e-36 154.5 197 45.7
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 9.4e-36 154.5 189 43.9
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 2.1e-35 153.3 191 45.5
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 3.6e-35 152.5 198 43.4
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 4.7e-35 152.1 216 40.7
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 1.0e-34 151.0 199 42.2
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 1.0e-34 151.0 214 43.9
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 1.0e-34 151.0 217 42.9
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.8e-34 150.2 207 44.0
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 2.3e-34 149.8 199 42.2
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 2.3e-34 149.8 199 41.7
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 5.2e-34 148.7 207 43.5
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 6.8e-34 148.3 201 44.8
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 8.8e-34 147.9 196 43.9
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 2.6e-33 146.4 197 42.1
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 3.4e-33 146.0 181 45.9
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 4.9e-32 142.1 208 41.3
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 2.4e-31 139.8 212 42.5
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 2.4e-31 139.8 195 42.1
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 3.1e-31 139.4 216 36.1
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 2.0e-30 136.7 206 40.8
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 3.5e-30 136.0 207 36.7
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 4.5e-30 135.6 210 37.1
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 4.5e-30 135.6 204 38.2
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 7.7e-30 134.8 209 38.8
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 7.7e-30 134.8 193 42.5
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 1.3e-29 134.0 206 39.8
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 1.7e-29 133.7 205 38.5
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 2.3e-29 133.3 215 35.3
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 2.9e-29 132.9 213 38.0
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 6.6e-29 131.7 205 38.0
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 6.6e-29 131.7 205 38.0
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 1.5e-28 130.6 207 35.3
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 1.5e-28 130.6 182 39.0
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 3.3e-28 129.4 192 42.2
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 4.3e-28 129.0 206 35.4
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 7.3e-28 128.3 170 42.4
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 1.2e-27 127.5 207 40.6
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.6e-27 127.1 170 41.8
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 3.6e-27 125.9 200 40.5
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 6.1e-27 125.2 207 36.7
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 3.0e-26 122.9 186 41.4
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 4.4e-25 119.0 285 31.6
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 4.4e-25 119.0 213 38.5
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 9.8e-25 117.9 188 39.4
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.2e-24 116.7 122 50.0
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 1.6e-22 110.5 193 35.2
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 5.0e-21 105.5 107 46.7
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 5.0e-21 105.5 213 33.3
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.5e-20 104.0 152 43.4
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 2.1e-19 100.1 146 41.8
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 1.2e-17 94.4 110 45.5
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 2.0e-17 93.6 177 33.3
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 2.6e-17 93.2 110 45.5
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 5.8e-17 92.0 100 45.0
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 1.7e-16 90.5 80 56.2
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 1.4e-15 87.4 180 33.9
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 2.0e-14 83.6 87 44.8
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 2.5e-12 76.6 149 32.2
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 9.5e-12 74.7 128 36.7
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 3.6e-11 72.8 207 29.5
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 1.4e-10 70.9 203 30.0
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.5e-09 67.4 98 38.8
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 1.1e-07 61.2 50 52.0


User provided reference genes

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