Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 2.7e-46 188.3 97 100.0
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 1.2e-33 146.4 103 73.8
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 6.7e-29 130.6 104 68.3
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 1.8e-26 122.5 100 66.0
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 1.5e-25 119.4 102 69.6
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 2.2e-24 115.5 93 64.5
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 2.9e-24 115.2 92 68.5
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.2e-23 111.7 99 58.6
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 3.2e-23 111.7 98 64.3
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 4.2e-23 111.3 100 61.0
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 2.1e-22 109.0 82 67.1
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 6.7e-21 104.0 102 52.9
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 6.7e-21 104.0 95 58.9
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 8.7e-21 103.6 90 62.2
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 7.4e-20 100.5 98 57.1
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 1.3e-19 99.8 102 54.9
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 1.6e-19 99.4 98 55.1
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 1.4e-18 96.3 96 57.3
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 2.4e-18 95.5 99 58.6
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 4.0e-18 94.7 99 53.5
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 4.0e-18 94.7 94 53.2
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.2e-17 93.2 97 54.6
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 1.5e-17 92.8 77 64.9
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 2.0e-17 92.4 58 79.3
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 4.5e-17 91.3 93 51.6
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.7e-16 89.4 89 55.1
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 2.2e-16 89.0 95 51.6
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 1.4e-15 86.3 87 52.9
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 1.4e-15 86.3 97 51.5
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.5e-15 85.5 101 48.5
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 4.2e-15 84.7 101 47.5
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 5.5e-15 84.3 101 47.5
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 7.1e-15 84.0 101 47.5
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 7.1e-15 84.0 98 49.0
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 7.1e-15 84.0 90 50.0
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 9.3e-15 83.6 101 47.5
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 2.1e-14 82.4 88 50.0
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 2.1e-14 82.4 92 45.7
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.7e-14 82.0 101 46.5
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 3.5e-14 81.6 97 49.5
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 6.0e-14 80.9 93 52.7
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 6.0e-14 80.9 93 52.7
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 1.0e-13 80.1 102 48.0
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.3e-13 79.7 108 45.4
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 1.3e-13 79.7 100 47.0
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.8e-13 79.3 70 58.6
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.8e-13 79.3 92 52.2
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 2.3e-13 79.0 95 52.6
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.3e-13 79.0 97 50.5
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 3.0e-13 78.6 89 49.4
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 3.0e-13 78.6 99 49.5
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 3.9e-13 78.2 93 49.5
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 3.9e-13 78.2 89 47.2
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 3.9e-13 78.2 106 43.4
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 5.1e-13 77.8 97 46.4
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 5.1e-13 77.8 91 51.6
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 5.1e-13 77.8 93 47.3
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 5.1e-13 77.8 97 49.5
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 6.7e-13 77.4 98 43.9
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.5e-12 76.3 98 46.9
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 1.5e-12 76.3 97 47.4
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 1.9e-12 75.9 103 46.6
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 1.9e-12 75.9 97 46.4
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 7.4e-12 73.9 98 45.9
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 7.4e-12 73.9 98 45.9
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 1.6e-11 72.8 91 48.4
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 2.8e-11 72.0 100 43.0
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 4.8e-11 71.2 104 45.2
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 4.8e-11 71.2 100 45.0
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 4.8e-11 71.2 106 44.3
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 6.3e-11 70.9 92 45.7
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 1.4e-10 69.7 89 50.6
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 1.4e-10 69.7 98 42.9
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.4e-10 68.9 88 48.9
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 3.1e-10 68.6 89 46.1
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 5.3e-10 67.8 92 45.7
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.9e-10 67.4 97 45.4
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 2.0e-09 65.9 79 49.4
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 3.4e-09 65.1 66 53.0
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 3.4e-09 65.1 103 41.7
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 3.4e-09 65.1 78 51.3
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 5.9e-09 64.3 98 45.9
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 7.6e-09 63.9 91 39.6
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 1.0e-08 63.5 103 40.8
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 1.3e-08 63.2 87 44.8
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 1.3e-08 63.2 95 42.1
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 2.2e-08 62.4 89 44.9
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 2.2e-08 62.4 104 41.3
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 2.9e-08 62.0 97 40.2
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 3.8e-08 61.6 71 47.9
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 3.8e-08 61.6 90 42.2
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 6.5e-08 60.8 65 53.8
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 8.5e-08 60.5 77 45.5
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 1.1e-07 60.1 97 41.2
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 1.1e-07 60.1 97 41.2
Lalb_Chr13g0295291 Lupinus albus HOM05D005059 ORTHO05D004248 1.1e-07 60.1 71 47.9
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 1.4e-07 59.7 97 40.2
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 1.9e-07 59.3 97 41.2
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 2.5e-07 58.9 77 46.8
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 2.5e-07 58.9 98 38.8
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 4.2e-07 58.2 97 38.1
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 4.2e-07 58.2 97 38.1
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 4.2e-07 58.2 97 38.1
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 5.5e-07 57.8 98 40.8
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 5.5e-07 57.8 98 40.8
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 5.5e-07 57.8 98 40.8
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 7.2e-07 57.4 97 38.1
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 7.2e-07 57.4 97 38.1
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 7.2e-07 57.4 65 44.6
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 9.3e-07 57.0 77 46.8
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 9.3e-07 57.0 77 46.8
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 1.2e-06 56.6 71 50.7
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 2.1e-06 55.8 98 39.8
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 2.1e-06 55.8 92 40.2
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 2.1e-06 55.8 97 40.2
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 2.7e-06 55.5 98 42.9
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 2.7e-06 55.5 57 49.1
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 2.7e-06 55.5 86 41.9
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 2.7e-06 55.5 98 35.7
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 2.7e-06 55.5 98 38.8
QL08p025461 Quercus lobata HOM05D008890 ORTHO05D004248 2.7e-06 55.5 90 33.3
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 4.6e-06 54.7 105 40.0
ATR0127G031 Amborella trichopoda HOM05D005059 ORTHO05D067457 4.6e-06 54.7 74 44.6
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 4.6e-06 54.7 92 43.5
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 4.6e-06 54.7 92 43.5
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 4.6e-06 54.7 92 43.5
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 6.1e-06 54.3 95 34.7
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.1e-06 54.3 85 36.5
unitig_744.g24543 Utricularia gibba HOM05D005059 ORTHO05D004248 6.1e-06 54.3 90 37.8


User provided reference genes

Program Settings