Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 2.8e-58 228.8 149 100.0
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 2.8e-58 228.8 149 100.0
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 1.2e-37 160.2 149 65.1
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 2.1e-37 159.5 149 65.1
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 6.0e-37 157.9 151 66.2
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 4.0e-33 145.2 152 61.2
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 1.2e-32 143.7 153 61.4
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 1.2e-32 143.7 149 61.1
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 4.1e-30 135.2 153 60.8
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 5.4e-30 134.8 154 58.4
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 5.4e-30 134.8 154 58.4
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 8.7e-28 127.5 153 60.1
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 1.1e-27 127.1 94 76.6
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 3.3e-27 125.6 93 76.3
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 4.3e-27 125.2 94 73.4
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 5.6e-27 124.8 152 55.9
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 1.2e-26 123.6 94 73.4
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 1.6e-26 123.2 94 74.5
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.1e-26 122.9 149 55.7
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 2.1e-26 122.9 153 54.9
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 4.7e-26 121.7 149 55.0
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 4.7e-26 121.7 149 55.0
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 4.7e-26 121.7 149 55.7
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.1e-25 120.6 94 73.4
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 3.1e-25 119.0 94 73.4
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 9.0e-25 117.5 89 73.0
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 2.6e-24 115.9 141 58.9
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.6e-24 115.9 88 71.6
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 2.6e-24 115.9 88 71.6
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 3.4e-24 115.5 151 50.3
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 4.4e-24 115.2 89 71.9
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 4.4e-24 115.2 94 69.1
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 5.8e-24 114.8 94 71.3
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 5.8e-24 114.8 83 77.1
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 7.6e-24 114.4 150 53.3
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 7.6e-24 114.4 94 71.3
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 1.3e-23 113.6 153 51.0
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 1.3e-23 113.6 89 70.8
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.3e-23 113.6 94 70.2
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.3e-23 113.6 94 70.2
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 1.7e-23 113.2 94 70.2
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 1.7e-23 113.2 91 70.3
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 2.9e-23 112.5 161 51.6
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.9e-23 112.5 88 70.5
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 3.8e-23 112.1 89 73.0
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 3.8e-23 112.1 91 69.2
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 8.4e-23 110.9 94 68.1
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 8.4e-23 110.9 89 71.9
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 8.4e-23 110.9 153 53.6
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 1.1e-22 110.5 88 69.3
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 1.9e-22 109.8 93 67.7
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 2.4e-22 109.4 89 71.9
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 2.4e-22 109.4 84 72.6
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 9.3e-22 107.5 93 65.6
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 1.2e-21 107.1 92 68.5
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 1.2e-21 107.1 99 62.6
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 1.6e-21 106.7 94 68.1
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 2.1e-21 106.3 94 68.1
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 2.1e-21 106.3 94 68.1
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 2.7e-21 105.9 94 69.1
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 7.8e-21 104.4 94 64.9
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 7.8e-21 104.4 95 64.2
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 7.8e-21 104.4 150 48.7
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 7.8e-21 104.4 89 66.3
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 7.8e-21 104.4 88 67.0
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 1.0e-20 104.0 66 84.8
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 3.0e-20 102.4 95 64.2
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 6.6e-20 101.3 75 73.3
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 6.6e-20 101.3 95 60.0
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 8.7e-20 100.9 95 66.3
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 8.7e-20 100.9 94 66.0
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 1.1e-19 100.5 92 63.0
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 1.5e-19 100.1 95 65.3
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 1.9e-19 99.8 79 69.6
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 5.6e-19 98.2 72 75.0
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 5.6e-19 98.2 75 70.7
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 7.3e-19 97.8 94 60.6
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 1.3e-18 97.1 96 59.4
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 2.1e-18 96.3 92 60.9
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 2.1e-18 96.3 89 60.7
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 2.8e-18 95.9 89 61.8
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 2.8e-18 95.9 90 64.4
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 2.8e-18 95.9 89 61.8
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 2.8e-18 95.9 89 61.8
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 3.6e-18 95.5 90 64.4
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 3.6e-18 95.5 90 64.4
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 3.6e-18 95.5 90 64.4
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 3.6e-18 95.5 158 45.6
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 4.8e-18 95.1 90 63.3
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 6.2e-18 94.7 90 63.3
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 6.2e-18 94.7 90 62.2
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 6.2e-18 94.7 89 64.0
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 8.1e-18 94.4 95 63.2
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 8.1e-18 94.4 89 62.9
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 1.1e-17 94.0 90 62.2
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 1.1e-17 94.0 89 62.9
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 1.1e-17 94.0 99 62.6
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 1.4e-17 93.6 90 62.2
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 1.4e-17 93.6 90 62.2
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 1.4e-17 93.6 93 62.4
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 1.8e-17 93.2 91 62.6
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 1.8e-17 93.2 91 62.6
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 1.8e-17 93.2 89 61.8
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 3.1e-17 92.4 95 61.1
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 4.0e-17 92.0 92 59.8
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 5.3e-17 91.7 89 61.8
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 6.9e-17 91.3 80 63.8
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 6.9e-17 91.3 102 56.9
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 6.9e-17 91.3 89 61.8
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 6.9e-17 91.3 89 61.8
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 9.0e-17 90.9 89 58.4
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 2.6e-16 89.4 89 59.6
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 3.4e-16 89.0 89 59.6
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 4.5e-16 88.6 67 71.6
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 4.5e-16 88.6 90 61.1
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 2.9e-15 85.9 89 59.6
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 1.6e-13 80.1 101 52.5
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 2.1e-13 79.7 160 41.2
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 3.9e-12 75.5 93 55.9
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 1.5e-11 73.6 62 62.9
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 1.3e-10 70.5 94 54.3
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 1.6e-10 70.1 51 70.6
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 2.8e-10 69.3 63 61.9
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 3.7e-10 68.9 148 39.9
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 1.1e-09 67.4 56 66.1
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 9.0e-09 64.3 65 58.5
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 1.7e-07 60.1 89 47.2
PRCOL_00001665 Prasinoderma coloniale HOM05D005954 ORTHO05D007347 8.4e-07 57.8 60 58.3
Cre01.g030050 Chlamydomonas reinhardtii HOM05D005954 ORTHO05D007347 4.2e-06 55.5 88 42.0


User provided reference genes

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