Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 7.5e-86 320.5 160 100.0
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 3.6e-64 248.4 161 81.4
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 2.2e-61 239.2 138 85.5
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 2.9e-61 238.8 153 81.7
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 4.9e-61 238.0 136 86.8
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.4e-52 209.9 159 73.0
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 2.1e-51 206.1 156 74.4
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.1e-49 200.3 154 69.5
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.8e-47 193.0 162 67.9
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 1.1e-44 183.7 135 68.1
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 2.7e-43 179.1 161 65.8
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 3.5e-43 178.7 151 69.5
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 3.9e-42 175.3 125 71.2
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 3.9e-42 175.3 125 71.2
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 7.3e-41 171.0 142 62.0
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 9.6e-41 170.6 168 60.7
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 4.7e-40 168.3 168 60.7
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 4.0e-39 165.2 142 59.9
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 2.6e-38 162.5 167 58.1
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 9.9e-38 160.6 130 64.6
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 5.4e-36 154.8 129 64.3
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.2e-35 153.7 156 56.4
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 2.7e-35 152.5 143 55.9
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 6.0e-35 151.4 166 54.2
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 6.0e-35 151.4 157 56.1
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 1.0e-34 150.6 159 54.1
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 6.6e-34 147.9 152 50.7
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 8.7e-34 147.5 156 57.1
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 2.5e-33 146.0 139 58.3
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.5e-33 146.0 139 58.3
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.5e-33 146.0 141 58.2
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 5.6e-33 144.8 153 54.2
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 7.3e-33 144.4 172 51.7
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 7.3e-33 144.4 167 52.7
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.1e-31 140.6 151 55.0
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.8e-31 139.8 140 57.1
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 1.8e-31 139.8 147 56.5
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 1.8e-31 139.8 157 56.7
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 3.1e-31 139.0 140 56.4
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 4.0e-31 138.7 149 55.7
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 4.0e-31 138.7 143 52.4
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 5.3e-31 138.3 149 55.7
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 6.9e-31 137.9 149 55.0
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 9.0e-31 137.5 122 59.8
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 9.0e-31 137.5 156 53.8
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 1.5e-30 136.7 149 53.7
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 2.0e-30 136.3 129 58.1
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.4e-30 135.6 150 54.0
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 3.4e-30 135.6 138 56.5
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 7.6e-30 134.4 176 48.9
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 1.3e-29 133.7 149 50.3
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.9e-29 132.5 161 52.8
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 2.9e-29 132.5 141 56.7
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 6.4e-29 131.3 151 49.7
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 1.1e-28 130.6 151 55.0
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.9e-28 129.8 152 48.0
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 2.4e-28 129.4 130 54.6
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.2e-28 129.0 151 51.0
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 4.2e-28 128.6 136 54.4
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 5.4e-28 128.3 154 50.6
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 5.4e-28 128.3 151 49.0
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 7.1e-28 127.9 121 57.0
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 1.2e-27 127.1 175 44.6
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.7e-27 125.9 174 43.1
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 3.5e-27 125.6 134 56.7
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.5e-27 125.6 151 51.0
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 4.6e-27 125.2 161 48.4
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 7.9e-27 124.4 144 50.0
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 1.3e-26 123.6 150 48.0
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 3.0e-26 122.5 161 46.0
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 5.1e-26 121.7 154 48.1
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 5.1e-26 121.7 154 48.1
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 1.5e-25 120.2 126 50.0
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 2.5e-25 119.4 153 48.4
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.3e-24 117.1 154 46.1
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 1.6e-24 116.7 112 58.9
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 6.2e-24 114.8 158 45.6
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 6.2e-24 114.8 152 46.7
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 8.1e-24 114.4 159 45.9
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 8.1e-24 114.4 160 44.4
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.1e-23 114.0 148 48.6
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.1e-23 114.0 136 53.7
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 1.4e-23 113.6 153 48.4
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 1.4e-23 113.6 142 50.7
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 6.9e-23 111.3 159 49.1
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 9.0e-23 110.9 129 51.9
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 1.2e-22 110.5 146 46.6
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.5e-22 110.2 157 42.7
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 3.4e-22 109.0 136 47.8
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 2.2e-21 106.3 158 44.3
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 2.9e-21 105.9 163 44.2
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 3.8e-21 105.5 151 41.1
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.1e-20 104.0 121 50.4
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 1.4e-20 103.6 151 40.4
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 1.4e-20 103.6 151 40.4
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.4e-20 103.6 155 43.2
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.9e-20 103.2 132 43.2
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 1.9e-20 103.2 155 41.9
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 2.5e-20 102.8 151 40.4
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 3.2e-20 102.4 151 40.4
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.2e-20 102.4 126 51.6
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 5.5e-20 101.7 120 50.0
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 7.1e-20 101.3 149 42.3
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 7.1e-20 101.3 162 42.6
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 9.3e-20 100.9 145 44.1
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 1.6e-19 100.1 150 42.0
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 1.6e-19 100.1 150 42.0
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 1.6e-19 100.1 139 39.6
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 2.1e-19 99.8 149 41.6
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 2.1e-19 99.8 117 47.0
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 4.6e-19 98.6 148 41.9
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 7.9e-19 97.8 126 47.6
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 7.9e-19 97.8 163 39.9
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.3e-18 97.1 141 42.6
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 1.8e-18 96.7 139 38.8
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 3.0e-18 95.9 139 38.8
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 3.0e-18 95.9 139 38.8
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 3.9e-18 95.5 145 41.4
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 5.1e-18 95.1 145 42.1
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 6.7e-18 94.7 144 41.0
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 1.1e-17 94.0 139 38.8
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 1.5e-17 93.6 161 42.2
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 1.9e-17 93.2 57 77.2
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 2.5e-17 92.8 149 40.3
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 3.3e-17 92.4 102 51.0
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 4.3e-17 92.0 152 39.5
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 4.3e-17 92.0 152 39.5
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 4.3e-17 92.0 152 39.5
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 5.6e-17 91.7 155 42.6
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 7.4e-17 91.3 147 43.5
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.1e-15 87.4 135 41.5
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 6.9e-15 84.7 149 39.6
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 4.5e-14 82.0 117 41.9
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.5e-12 76.3 91 49.5
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 3.2e-12 75.9 65 63.1
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 1.6e-11 73.6 64 54.7
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 3.0e-10 69.3 153 31.4
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 1.3e-08 63.9 134 32.8
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.4e-07 60.5 126 35.7
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 3.1e-07 59.3 93 41.9
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.2e-06 57.4 145 33.1
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 2.0e-06 56.6 146 32.2
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 2.0e-06 56.6 126 34.1
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 2.6e-06 56.2 143 32.9
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 2.6e-06 56.2 165 32.1
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 4.5e-06 55.5 152 30.9
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 4.5e-06 55.5 89 37.1
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 5.9e-06 55.1 77 44.2
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 5.9e-06 55.1 158 32.3
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 5.9e-06 55.1 123 35.0
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 7.7e-06 54.7 94 39.4
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 7.7e-06 54.7 159 27.7


User provided reference genes

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