Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00459_v3 Cicer arietinum L. HOM05D007891 ORTHO05D009992 4.8e-22 107.1 59 100.0
TPR.G27295 Trifolium pratense HOM05D007891 ORTHO05D009992 3.8e-19 97.4 58 89.7
Medtr2g016650 Medicago truncatula HOM05D007891 ORTHO05D009992 1.4e-18 95.5 59 86.4
Phvul.006G173900 Phaseolus vulgaris HOM05D007891 ORTHO05D009992 6.7e-16 86.7 59 79.7
arahy.Tifrunner.gnm1.ann1.GMZ6HP Arachis hypogaea HOM05D007891 ORTHO05D009992 8.8e-16 86.3 55 87.3
Lj6g0010842 Lotus japonicus HOM05D007891 ORTHO05D009992 3.3e-15 84.3 54 85.2
Lalb_Chr20g0117551 Lupinus albus HOM05D007891 ORTHO05D009992 3.7e-14 80.9 54 81.5
RcHm_v2.0_Chr7g0187861 Rosa chinensis HOM05D007891 ORTHO05D009992 3.4e-12 74.3 50 76.0
Nn3g18767 Nelumbo nucifera HOM05D007891 ORTHO05D009992 5.9e-12 73.6 51 76.5
COL.COLO4_10847 Corchorus olitorius HOM05D007891 ORTHO05D009992 1.0e-11 72.8 54 68.5
Manes.01G000186 Manihot esculenta HOM05D007891 ORTHO05D009992 5.0e-11 70.5 48 77.1
Ciclev10023227m.g Citrus clementina HOM05D007891 ORTHO05D009992 1.1e-10 69.3 48 75.0
Prupe.5G135300 Prunus persica HOM05D007891 ORTHO05D009992 1.1e-10 69.3 50 74.0
Gohir.D03G088400 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.9e-10 68.6 51 70.6
Gorai.003G073400 Gossypium raimondii HOM05D007891 ORTHO05D009992 1.9e-10 68.6 51 70.6
MD00G1096700 Malus domestica HOM05D007891 ORTHO05D009992 1.9e-10 68.6 50 68.0
QL12p003189 Quercus lobata HOM05D007891 ORTHO05D009992 1.9e-10 68.6 47 76.6
MD06G1124700 Malus domestica HOM05D007891 ORTHO05D009992 2.5e-10 68.2 51 66.7
ATR0579G034 Amborella trichopoda HOM05D007891 ORTHO05D009992 3.2e-10 67.8 47 74.5
CANSAT21G1412 Cannabis sativa HOM05D007891 ORTHO05D009992 3.2e-10 67.8 50 74.0
Thecc.03G215400 Theobroma cacao HOM05D007891 ORTHO05D009992 3.2e-10 67.8 50 70.0
Duzib205G0121 Durio zibethinus HOM05D007891 ORTHO05D009992 4.2e-10 67.4 50 64.0
Gohir.A02G095100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 4.2e-10 67.4 51 68.6
TWI15G0344 Tripterygium wilfordii HOM05D007891 ORTHO05D009992 4.2e-10 67.4 50 70.0
Os04g0581700 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 5.5e-10 67.0 46 73.9
Zm00001eb072990 Zea mays HOM05D007891 ORTHO05D009992 7.2e-10 66.6 46 76.1
Gohir.A09G187300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 9.4e-10 66.2 54 64.8
Nn1g05266 Nelumbo nucifera HOM05D007891 ORTHO05D009992 9.4e-10 66.2 50 72.0
Zm00001eb250770 Zea mays HOM05D007891 ORTHO05D009992 1.2e-09 65.9 47 72.3
Cfa011885 Carpinus fangiana HOM05D007891 ORTHO05D009992 1.6e-09 65.5 48 68.8
PGR042G1189 Punica granatum HOM05D007891 ORTHO05D009992 2.1e-09 65.1 50 68.0
Lalb_Chr15g0086271 Lupinus albus HOM05D007891 ORTHO05D009992 3.6e-09 64.3 54 70.4
PSO063G6751 Papaver somniferum HOM05D007891 ORTHO05D009992 3.6e-09 64.3 55 63.6
Potri.011G149400 Populus trichocarpa HOM05D007891 ORTHO05D009992 4.7e-09 63.9 48 68.8
Eucgr.L00345 Eucalyptus grandis HOM05D007891 ORTHO05D009992 1.0e-08 62.8 47 68.1
Gorai.004G128000 Gossypium raimondii HOM05D007891 ORTHO05D009992 1.0e-08 62.8 48 68.8
Gohir.A08G108600 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.4e-08 62.4 50 64.0
Gohir.D09G182100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.4e-08 62.4 50 64.0
Gorai.006G204200 Gossypium raimondii HOM05D007891 ORTHO05D009992 1.4e-08 62.4 50 64.0
Glyma.15G084900 Glycine max HOM05D007891 ORTHO05D009992 2.3e-08 61.6 45 80.0
Glyma.13G227500 Glycine max HOM05D007891 ORTHO05D009992 3.0e-08 61.2 35 97.1
ClCG01G001300 Citrullus lanatus HOM05D007891 ORTHO05D009992 6.7e-08 60.1 45 66.7
Haze_09219 Corylus avellana HOM05D000010 ORTHO05D000063 6.7e-08 60.1 42 69.0
Migut.A01060 Erythranthe guttata HOM05D007891 ORTHO05D009992 8.8e-08 59.7 49 67.3
THA.LOC104806463 Tarenaya hassleriana HOM05D007891 ORTHO05D009992 2.0e-07 58.5 50 60.0
Gohir.D08G121300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 2.6e-07 58.2 48 62.5
Os07g0469200 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 2.6e-07 58.2 53 64.2
CsaV3_5G001430 Cucumis sativus L. HOM05D007891 ORTHO05D009992 4.4e-07 57.4 45 64.4
Zm00001eb096350 Zea mays HOM05D007891 ORTHO05D009992 5.7e-07 57.0 51 64.7
Zm00001eb096380 Zea mays HOM05D007891 ORTHO05D009992 5.7e-07 57.0 51 64.7
Zm00001eb096410 Zea mays HOM05D007891 ORTHO05D009992 1.3e-06 55.8 51 62.7
Zm00001eb096420 Zea mays HOM05D007891 ORTHO05D009992 1.3e-06 55.8 51 62.7
Zm00001eb096470 Zea mays HOM05D007891 ORTHO05D009992 1.7e-06 55.5 51 62.7
CSS0018813 Camellia sinensis var. sinensis HOM05D007891 ORTHO05D009992 2.8e-06 54.7 52 61.5
SalBow6G2331 Salvia bowleyana HOM05D007891 ORTHO05D009992 4.8e-06 53.9 55 56.4
HPP92_022259 Vanilla planifolia HOM05D007891 ORTHO05D009992 4.8e-06 53.9 49 61.2
Sed0006175 Sechium edule HOM05D007891 ORTHO05D009992 6.3e-06 53.5 48 54.2
Actinidia22232 Actinidia chinensis HOM05D007891 ORTHO05D009992 8.2e-06 53.1 50 64.0


User provided reference genes

Program Settings