Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 2.1e-87 326.6 253 100.0
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 7.7e-82 308.1 252 95.2
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 2.9e-81 306.2 249 96.0
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 1.9e-80 303.5 253 92.9
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 4.2e-80 302.4 253 93.3
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 2.5e-77 293.1 253 91.3
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 1.4e-75 287.3 253 89.7
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 1.4e-75 287.3 253 89.7
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 1.4e-75 287.3 254 89.4
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 2.9e-73 279.6 143 91.6
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 6.5e-73 278.5 253 87.4
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 1.1e-72 277.7 248 90.7
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 1.1e-72 277.7 248 90.7
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 1.1e-72 277.7 251 88.8
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 2.5e-72 276.6 248 90.3
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 4.2e-72 275.8 143 90.2
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 1.2e-71 274.2 253 86.6
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 1.2e-71 274.2 253 87.0
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 7.9e-71 271.6 252 86.9
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 1.0e-70 271.2 252 87.3
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 1.0e-70 271.2 253 86.2
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 1.4e-70 270.8 253 84.2
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 3.0e-70 269.6 251 86.5
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 5.1e-70 268.9 252 86.1
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 1.5e-69 267.3 248 86.7
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 2.6e-69 266.5 253 84.2
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 2.6e-69 266.5 256 85.2
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.3e-69 266.2 254 83.9
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.3e-69 266.2 254 84.3
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 3.3e-69 266.2 244 88.1
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 3.3e-69 266.2 253 83.4
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 4.4e-69 265.8 254 84.3
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 4.4e-69 265.8 254 84.3
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 4.4e-69 265.8 248 87.1
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 7.4e-69 265.0 247 87.4
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 9.7e-69 264.6 248 84.7
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 1.3e-68 264.2 254 83.9
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.7e-68 263.8 253 83.8
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 2.2e-68 263.5 244 88.5
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 2.8e-68 263.1 259 82.6
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 2.8e-68 263.1 244 88.9
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 6.3e-68 261.9 259 82.6
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 8.2e-68 261.5 253 85.4
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 1.1e-67 261.2 252 85.3
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 1.1e-67 261.2 253 85.4
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 1.1e-67 261.2 253 85.4
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.4e-67 260.8 253 85.8
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 1.4e-67 260.8 253 81.0
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.8e-67 260.4 253 85.8
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 2.4e-67 260.0 143 82.5
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 4.1e-67 259.2 254 83.9
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 4.1e-67 259.2 261 81.2
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 4.1e-67 259.2 253 85.0
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 9.1e-67 258.1 248 85.1
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 9.1e-67 258.1 252 84.9
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 1.2e-66 257.7 143 84.6
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 1.6e-66 257.3 248 86.3
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 2.6e-66 256.5 253 83.0
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 5.9e-66 255.4 253 84.6
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.0e-65 254.6 254 82.3
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 1.7e-65 253.8 242 86.8
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.9e-65 253.1 254 82.3
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 3.8e-65 252.7 143 80.4
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 5.0e-65 252.3 254 81.1
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 6.5e-65 251.9 254 82.7
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 1.1e-64 251.1 143 79.7
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 1.1e-64 251.1 248 84.3
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 1.5e-64 250.8 252 82.9
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 1.9e-64 250.4 251 83.7
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 3.2e-64 249.6 253 82.6
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 3.2e-64 249.6 253 82.6
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 3.2e-64 249.6 253 82.6
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 3.2e-64 249.6 253 82.6
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 3.2e-64 249.6 253 82.6
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 3.2e-64 249.6 251 83.3
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 5.5e-64 248.8 254 82.3
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 7.2e-64 248.4 143 78.3
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 1.2e-63 247.7 146 79.5
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 2.3e-62 243.4 144 77.8
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 3.0e-62 243.0 252 81.0
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 4.0e-62 242.7 143 76.9
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 4.0e-62 242.7 143 76.9
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 4.0e-62 242.7 144 78.5
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 5.2e-62 242.3 143 77.6
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.1e-61 241.1 143 76.2
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 1.5e-61 240.7 243 84.0
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 2.0e-61 240.4 248 81.0
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 2.6e-61 240.0 143 76.9
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.3e-61 239.6 143 76.2
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 4.4e-61 239.2 143 75.5
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 7.5e-61 238.4 143 76.2
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 1.7e-60 237.3 143 75.5
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 1.7e-60 237.3 143 75.5
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 1.7e-60 237.3 143 75.5
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 1.7e-60 237.3 143 75.5
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 1.7e-60 237.3 144 76.4
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 2.8e-60 236.5 143 72.7
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 3.7e-60 236.1 143 75.5
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 3.7e-60 236.1 143 74.8
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 3.7e-60 236.1 144 74.3
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 4.8e-60 235.7 143 76.2
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 4.8e-60 235.7 143 74.1
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.4e-59 234.2 144 73.6
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 5.3e-59 232.3 144 75.0
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 3.8e-57 226.1 143 72.0
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 5.9e-50 202.2 143 64.3
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 9.4e-48 194.9 253 76.7
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 8.8e-46 188.3 143 58.0
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 4.4e-45 186.0 143 60.8
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.3e-44 184.5 115 70.4
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 1.1e-43 181.4 139 59.7
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 1.1e-43 181.4 144 56.2
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 3.1e-43 179.9 143 60.1
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 3.8e-41 172.9 210 81.0
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 4.3e-40 169.5 106 73.6
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 2.1e-39 167.2 143 57.3
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 4.9e-36 156.0 111 67.6
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 1.6e-34 151.0 110 63.6
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 1.0e-33 148.3 141 52.5
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 6.2e-31 139.0 109 56.9
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 9.8e-29 131.7 131 47.3
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 4.1e-27 126.3 114 55.3
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 8.9e-22 108.6 143 41.3
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.0e-17 93.6 143 37.1
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.3e-16 90.1 143 37.1
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 5.8e-13 79.3 120 40.8
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 3.7e-12 76.6 142 78.2
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 1.1e-11 75.1 111 40.5
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 9.2e-11 72.0 136 79.4
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 2.7e-10 70.5 35 88.6
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 4.3e-08 63.2 30 93.3
Cfa022092 Carpinus fangiana HOM05D000164 ORTHO05D121826 6.2e-07 59.3 76 42.1


User provided reference genes

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