Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 4.3e-228 794.3 393 100.0
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 1.4e-210 736.1 395 93.7
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 8.0e-198 693.7 378 92.6
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 6.8e-197 690.6 393 89.1
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 2.9e-192 675.2 427 83.4
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 3.7e-187 658.3 364 90.7
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 1.1e-186 656.8 364 90.4
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 2.8e-182 642.1 377 86.7
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 2.3e-181 639.0 382 84.0
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 3.4e-180 635.2 385 82.6
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 5.4e-178 627.9 394 80.5
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 5.9e-177 624.4 380 81.8
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 1.7e-176 622.9 380 82.1
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 1.9e-175 619.4 389 81.5
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 1.2e-174 616.7 365 84.4
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 3.6e-174 615.1 390 80.0
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 6.2e-174 614.4 373 82.3
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 1.8e-173 612.8 384 82.0
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 2.3e-173 612.5 384 82.0
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 3.1e-173 612.1 365 83.8
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 3.1e-173 612.1 365 83.8
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 5.2e-173 611.3 369 82.1
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 6.8e-173 610.9 377 81.2
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 2.0e-172 609.4 384 81.0
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 5.8e-172 607.8 385 80.0
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 7.5e-172 607.4 393 79.1
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 4.9e-171 604.7 390 79.2
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 4.9e-171 604.7 358 84.4
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 6.4e-171 604.4 398 77.4
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.1e-170 603.6 365 81.4
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 4.1e-170 601.7 373 80.2
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 1.6e-169 599.7 405 76.5
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 2.7e-169 599.0 390 78.7
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 3.5e-169 598.6 365 83.0
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 1.0e-168 597.0 391 77.5
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 2.3e-168 595.9 382 81.7
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 5.0e-168 594.7 358 82.4
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 5.0e-168 594.7 366 80.6
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 8.6e-168 594.0 390 76.2
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 1.2e-166 590.1 355 82.0
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 2.1e-166 589.3 378 79.6
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 2.1e-166 589.3 386 76.9
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 5.2e-165 584.7 401 76.8
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 1.5e-164 583.2 365 79.5
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 1.5e-164 583.2 365 79.5
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 3.4e-164 582.0 394 75.6
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 5.8e-164 581.3 399 74.4
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 1.3e-163 580.1 377 78.5
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 1.7e-163 579.7 365 79.2
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 1.4e-162 576.6 394 76.4
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 1.4e-162 576.6 401 74.1
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 1.9e-162 576.2 390 75.1
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 3.2e-162 575.5 369 78.6
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 7.1e-162 574.3 377 76.9
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 9.2e-162 573.9 390 75.1
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 2.1e-161 572.8 408 72.1
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 4.6e-161 571.6 358 79.6
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 5.1e-160 568.2 345 81.7
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 5.1e-160 568.2 380 76.1
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 6.6e-160 567.8 387 76.2
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 1.1e-159 567.0 413 71.2
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 1.5e-159 566.6 443 68.8
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 1.9e-159 566.2 373 76.4
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 5.6e-159 564.7 354 79.7
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 3.1e-157 558.9 375 76.3
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 9.9e-156 553.9 399 72.4
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 1.3e-155 553.5 421 70.1
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 1.7e-155 553.1 502 61.4
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 1.5e-151 540.0 386 74.9
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 1.5e-151 540.0 391 73.4
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 2.8e-150 535.8 346 78.6
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 1.8e-149 533.1 375 73.6
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 2.1e-145 519.6 390 70.8
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 3.3e-143 512.3 407 67.8
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 6.2e-142 508.1 380 68.4
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.4e-141 506.1 433 64.9
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 8.4e-139 497.7 271 92.6
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 1.2e-137 493.8 373 68.4
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 1.2e-137 493.8 393 67.9
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 2.7e-137 492.7 371 71.2
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 2.7e-137 492.7 357 71.4
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 7.9e-137 491.1 366 71.3
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 8.7e-136 487.6 372 68.0
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 2.1e-134 483.0 298 81.5
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.1e-133 480.7 357 70.3
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 2.6e-132 476.1 360 66.4
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 3.8e-131 472.2 365 68.8
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 9.3e-130 467.6 355 69.6
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 2.3e-128 463.0 363 68.3
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 1.3e-126 457.2 388 62.6
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 5.5e-122 441.8 301 74.8
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 9.3e-122 441.0 336 68.8
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 7.6e-116 421.4 228 93.9
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 1.9e-114 416.8 367 58.6
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 4.2e-106 389.0 370 55.9
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 1.3e-102 377.5 430 50.7
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.3e-102 377.5 229 83.8
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 1.6e-89 334.0 220 80.9
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 3.3e-87 326.2 215 78.6
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.2e-84 317.8 152 99.3
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.5e-82 310.1 189 83.6
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 9.4e-82 308.1 202 78.2
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.3e-80 303.5 207 77.3
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 6.1e-73 278.9 173 79.2
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 9.8e-71 271.6 175 75.4
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 2.2e-70 270.4 502 38.2
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 6.6e-67 258.8 157 84.1
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 1.9e-66 257.3 325 48.9
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 1.0e-64 251.5 165 80.0
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 1.8e-64 250.8 155 81.9
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 2.3e-64 250.4 143 86.7
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 3.7e-62 243.0 157 74.5
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 4.1e-61 239.6 137 83.9
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 7.0e-61 238.8 157 72.6
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 1.0e-59 235.0 220 60.9
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 1.0e-59 235.0 220 60.9
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 1.0e-59 235.0 220 60.9
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 3.1e-56 223.4 222 61.3
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 2.7e-44 183.7 101 90.1
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 7.8e-44 182.2 134 67.9
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.6e-41 174.5 98 88.8
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 2.8e-41 173.7 97 85.6
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 3.5e-36 156.8 92 82.6
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 2.5e-34 150.6 84 88.1
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 5.8e-31 139.4 124 61.3
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 4.9e-30 136.3 91 74.7
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 3.2e-29 133.7 80 76.2
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 3.0e-27 127.1 94 71.3
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 1.1e-26 125.2 94 70.2
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 2.1e-25 120.9 74 79.7
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 2.6e-23 114.0 116 52.6
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 7.1e-21 105.9 86 61.6
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 1.0e-19 102.1 62 77.4
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 3.0e-19 100.5 58 86.2
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 7.4e-18 95.9 181 38.1
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 9.3e-13 79.0 131 42.7
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 6.7e-11 72.8 73 49.3
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 5.8e-07 59.7 132 34.1


User provided reference genes

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