Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 1.5e-178 629.4 311 100.0
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 9.5e-162 573.5 313 92.0
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 1.1e-157 560.1 311 91.0
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 1.8e-144 516.2 305 85.6
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 7.6e-143 510.8 310 85.2
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 4.2e-141 505.0 311 81.7
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 1.6e-140 503.1 311 81.0
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 3.5e-140 501.9 305 84.6
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 1.1e-136 490.3 312 82.4
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 3.9e-131 471.9 304 78.3
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 1.1e-130 470.3 305 78.0
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 1.1e-130 470.3 305 78.0
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 2.5e-130 469.2 283 82.7
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 6.2e-129 464.5 288 81.6
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 1.1e-128 463.8 293 79.9
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 3.1e-128 462.2 285 81.4
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 3.1e-128 462.2 264 85.6
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 4.0e-128 461.8 274 82.5
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 9.0e-128 460.7 284 81.0
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 2.0e-127 459.5 285 80.7
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 7.6e-127 457.6 282 80.5
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 1.0e-126 457.2 285 79.3
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.3e-126 456.8 292 79.5
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 1.3e-126 456.8 271 83.4
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 2.9e-126 455.7 288 79.5
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 6.4e-126 454.5 282 79.8
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 6.4e-126 454.5 282 79.8
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 8.4e-126 454.1 286 80.1
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 1.1e-125 453.8 282 80.1
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 1.1e-125 453.8 269 83.3
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.9e-125 453.0 307 77.5
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 2.5e-125 452.6 274 81.8
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 4.2e-125 451.8 275 82.2
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 5.5e-125 451.4 285 77.2
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 9.3e-125 450.7 276 81.5
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 1.2e-124 450.3 264 84.1
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 2.1e-124 449.5 286 79.0
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 3.5e-124 448.7 263 83.7
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 4.6e-124 448.4 279 81.0
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 6.0e-124 448.0 279 79.9
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 7.9e-124 447.6 263 83.3
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 1.3e-123 446.8 310 74.2
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 1.8e-123 446.4 291 77.7
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 1.8e-123 446.4 276 82.6
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.3e-123 446.0 291 76.6
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 6.7e-123 444.5 272 80.5
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 6.7e-123 444.5 283 78.8
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 8.7e-123 444.1 301 76.1
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 8.7e-123 444.1 277 80.5
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 8.7e-123 444.1 308 75.3
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 1.5e-122 443.4 287 78.4
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.9e-122 443.0 263 82.9
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 3.3e-122 442.2 302 75.5
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 4.3e-122 441.8 280 80.0
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 4.3e-122 441.8 273 80.6
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 5.6e-122 441.4 273 81.0
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 7.4e-122 441.0 283 78.1
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 1.6e-121 439.9 298 74.2
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 2.1e-121 439.5 290 77.2
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 2.1e-121 439.5 290 77.2
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 2.1e-121 439.5 282 79.4
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 2.8e-121 439.1 286 76.9
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 3.7e-121 438.7 283 76.3
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 4.8e-121 438.3 283 78.1
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 6.2e-121 438.0 272 81.2
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 8.2e-121 437.6 263 81.4
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 1.1e-120 437.2 275 77.8
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 1.8e-120 436.4 264 80.7
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 2.4e-120 436.0 276 80.1
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 4.0e-120 435.3 263 82.9
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 6.9e-120 434.5 263 81.4
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 6.9e-120 434.5 284 74.6
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 9.0e-120 434.1 263 82.5
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 1.2e-119 433.7 277 79.4
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 1.5e-119 433.3 270 80.4
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.6e-119 432.6 308 73.1
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 4.5e-119 431.8 316 70.6
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 5.8e-119 431.4 305 72.1
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 5.8e-119 431.4 272 79.8
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 7.6e-119 431.0 263 79.8
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.9e-118 429.1 297 73.7
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 6.5e-118 427.9 297 73.7
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 8.4e-118 427.6 263 80.6
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 8.4e-118 427.6 264 79.2
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 1.9e-117 426.4 306 72.9
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 7.4e-114 414.5 283 73.5
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 1.3e-113 413.7 248 82.3
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 3.7e-113 412.1 264 78.0
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 4.5e-111 405.2 248 81.5
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 6.5e-110 401.4 262 73.3
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 1.4e-109 400.2 262 74.0
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.2e-109 399.1 351 61.3
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 5.5e-109 398.3 275 74.2
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 5.5e-109 398.3 261 74.7
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 1.6e-108 396.7 252 79.8
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 4.6e-108 395.2 231 81.8
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 1.8e-107 393.3 261 73.9
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 3.0e-107 392.5 255 77.3
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 1.3e-105 387.1 277 72.6
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.7e-105 386.7 293 68.9
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.5e-103 380.2 235 79.6
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 1.5e-103 380.2 263 70.3
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 6.5e-102 374.8 274 67.2
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 8.5e-102 374.4 286 69.9
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 1.9e-101 373.2 242 78.5
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 1.6e-100 370.2 288 69.8
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 4.7e-100 368.6 268 70.9
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 3.9e-99 365.5 264 70.8
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 3.3e-98 362.5 263 66.9
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 2.0e-95 353.2 261 65.9
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 3.8e-94 349.0 261 70.1
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 6.5e-94 348.2 263 66.5
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 8.5e-94 347.8 232 75.0
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 1.9e-93 346.7 219 80.4
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 3.0e-91 339.3 250 71.2
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 2.6e-90 336.3 240 73.8
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 4.4e-90 335.5 271 63.8
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 1.7e-89 333.6 262 61.8
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 2.6e-87 326.2 177 91.5
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 2.2e-86 323.2 268 60.1
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 4.7e-84 315.5 276 60.1
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 1.4e-83 313.9 275 61.5
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.5e-82 310.5 237 67.5
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 4.4e-82 308.9 174 86.8
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 3.1e-80 302.8 181 85.6
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.3e-75 286.6 184 75.5
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.4e-72 277.3 184 73.4
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 3.6e-68 262.7 183 75.4
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 1.4e-64 250.8 149 79.9
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 2.4e-64 250.0 171 75.4
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 1.6e-60 237.3 140 82.9
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 9.8e-58 228.0 121 91.7
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 9.8e-58 228.0 121 91.7
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.7e-55 219.9 260 45.4
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.0e-54 218.0 121 87.6
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.0e-54 218.0 121 87.6
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 1.1e-53 214.5 168 67.9
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 2.9e-49 199.9 144 70.1
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 4.3e-45 186.0 115 79.1
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 3.1e-43 179.9 108 83.3
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.9e-37 160.6 142 58.5
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.1e-35 154.8 125 54.4
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.1e-35 154.8 125 64.0
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 5.2e-35 152.5 263 38.4
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 1.2e-34 151.4 97 77.3
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 2.7e-31 140.2 157 47.8
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.7e-31 140.2 116 60.3
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 3.5e-31 139.8 103 70.9
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 2.8e-28 130.2 192 41.1
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 8.1e-28 128.6 160 50.6
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 1.8e-27 127.5 102 64.7
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 3.1e-27 126.7 71 90.1
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.0e-22 111.7 99 59.6
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.3e-20 104.8 69 69.6
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 2.1e-20 104.0 73 74.0
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 1.4e-19 101.3 197 38.1
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 5.8e-18 95.9 57 77.2
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 5.8e-18 95.9 57 77.2
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.4e-16 91.3 71 69.0
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 3.3e-13 80.1 46 78.3
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 9.3e-08 62.0 232 23.7
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.6e-07 61.2 34 76.5


User provided reference genes

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