Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 0.0e+00 1214.1 618 100.0
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 1.1e-302 1042.7 615 85.7
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 2.0e-272 942.2 617 79.7
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 3.2e-262 908.3 614 76.1
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 3.2e-262 908.3 610 76.7
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 1.1e-257 893.3 615 74.5
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 6.5e-255 884.0 614 73.9
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 3.7e-242 841.6 606 71.8
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 1.2e-229 800.0 487 83.6
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 3.0e-223 778.9 619 66.2
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 1.4e-220 770.0 621 66.0
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 1.4e-201 706.8 619 59.5
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 3.5e-200 702.2 614 60.3
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 8.7e-199 697.6 613 59.7
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 6.2e-197 691.4 615 59.0
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 1.8e-196 689.9 610 58.9
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 4.0e-196 688.7 407 84.8
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 3.4e-195 685.6 606 58.9
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 7.6e-195 684.5 615 57.4
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 3.2e-193 679.1 576 60.4
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 5.1e-191 671.8 604 58.6
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 5.1e-191 671.8 622 56.1
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 5.1e-191 671.8 624 55.9
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 1.1e-190 670.6 621 55.7
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 5.8e-187 658.3 620 56.0
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 2.2e-186 656.4 621 55.9
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 8.4e-186 654.4 620 55.3
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 1.9e-185 653.3 611 55.6
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 5.5e-185 651.7 555 59.8
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 7.1e-185 651.4 621 55.7
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 1.3e-183 647.1 602 56.3
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 5.1e-183 645.2 607 55.7
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 5.7e-182 641.7 622 54.5
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 3.1e-180 636.0 594 55.4
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 1.2e-179 634.0 581 56.3
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.2e-179 634.0 611 55.6
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 6.5e-178 628.2 597 54.6
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 4.2e-177 625.5 610 52.3
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 5.5e-177 625.2 668 51.2
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 3.0e-175 619.4 616 55.5
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 3.0e-175 619.4 609 55.8
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 5.3e-172 608.6 610 54.9
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 6.9e-172 608.2 610 53.4
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 7.7e-171 604.7 603 53.4
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 1.3e-170 604.0 636 51.3
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 1.7e-170 603.6 626 51.9
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 1.7e-170 603.6 584 54.3
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 6.1e-168 595.1 625 51.7
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 2.3e-167 593.2 625 51.7
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 3.0e-167 592.8 610 52.3
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 6.7e-167 591.7 602 51.7
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 1.1e-166 590.9 615 51.7
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 3.3e-166 589.3 626 51.8
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 3.3e-166 589.3 611 51.6
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 7.4e-166 588.2 630 51.7
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 1.3e-165 587.4 625 51.2
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 2.2e-165 586.6 631 50.6
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 6.3e-165 585.1 605 50.9
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 2.6e-163 579.7 661 49.8
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 3.4e-163 579.3 642 48.8
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 1.7e-162 577.0 623 50.1
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 2.9e-162 576.2 532 56.0
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 3.9e-159 565.8 625 48.8
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 1.5e-158 563.9 602 49.7
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 1.8e-156 557.0 572 50.9
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 5.3e-156 555.4 686 46.1
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 9.1e-156 554.7 572 50.3
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 1.0e-154 551.2 606 49.3
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 2.2e-154 550.1 450 61.1
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 8.5e-154 548.1 612 48.4
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 8.5e-154 548.1 711 43.7
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 3.6e-152 542.7 569 50.4
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 6.1e-152 542.0 610 47.9
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 3.3e-150 536.2 612 47.5
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 7.5e-150 535.0 635 47.6
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 7.5e-150 535.0 719 42.7
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 1.0e-143 514.6 637 45.5
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 2.8e-136 490.0 451 57.6
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 1.0e-135 488.0 431 57.5
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 6.8e-135 485.3 569 46.7
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 1.2e-134 484.6 456 55.0
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.7e-133 480.7 421 57.7
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 4.1e-132 476.1 648 42.9
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 1.6e-131 474.2 421 57.0
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 5.9e-131 472.2 579 45.3
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 2.1e-128 463.8 601 44.1
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 2.3e-127 460.3 628 42.7
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 9.2e-124 448.4 613 42.9
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 5.0e-122 442.6 417 54.7
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 4.7e-120 436.0 619 44.1
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 5.4e-116 422.5 416 53.8
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 5.1e-114 416.0 601 40.8
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 6.6e-114 415.6 417 51.6
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 1.4e-111 407.9 391 53.5
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 6.8e-111 405.6 417 50.8
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 3.4e-110 403.3 499 44.1
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 5.8e-110 402.5 628 40.8
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 7.8e-107 392.1 480 47.3
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 3.3e-97 360.1 207 88.4
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 1.1e-95 355.1 578 37.5
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.0e-90 338.6 651 34.4
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 9.6e-89 332.0 193 87.6
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 6.4e-85 319.3 578 36.5
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 1.5e-73 281.6 295 47.8
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 2.2e-61 241.1 590 30.3
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 3.1e-55 220.7 234 47.9
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 6.1e-43 179.9 640 27.0
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 4.1e-39 167.2 258 38.8
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 9.1e-31 139.4 238 36.6
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 7.2e-28 129.8 212 35.4
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 1.2e-25 122.5 302 31.1
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 1.3e-24 119.0 154 41.6
CDE10G0511 Ceratophyllum demersum HOM05D002520 ORTHO05D003144 1.0e-18 99.4 104 55.8
GSVIVG01026713001 Vitis vinifera HOM05D006452 ORTHO05D008068 3.7e-16 90.9 65 66.2
Pp3c17_22050 Physcomitrium patens HOM05D006452 ORTHO05D008068 1.4e-15 89.0 319 27.0
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 1.8e-15 88.6 179 36.9
Peaxi162Scf01018g00213 Petunia axillaris HOM05D006452 ORTHO05D008068 1.7e-13 82.0 67 61.2
BcaC01g06820 Brassica carinata HOM05D006452 ORTHO05D008068 9.5e-12 76.3 89 48.3
MBI15_g20021_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.2e-11 75.9 73 57.5
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 3.6e-11 74.3 49 69.4


User provided reference genes

Program Settings