Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 0.0e+00 1346.3 700 100.0
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 4.5e-260 901.4 709 68.0
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 1.1e-258 896.7 704 69.0
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 2.5e-234 815.8 646 68.4
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 3.2e-226 788.9 725 60.6
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.9e-218 763.1 727 59.1
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 4.3e-218 761.9 728 58.7
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 1.7e-214 750.0 598 64.5
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 7.0e-213 744.6 717 57.7
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 3.4e-175 619.4 726 51.1
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 4.2e-173 612.5 724 51.0
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 9.6e-170 601.3 520 62.5
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.0e-158 564.7 727 45.4
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.0e-158 564.7 717 45.0
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 2.9e-158 563.1 723 45.8
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 8.7e-155 551.6 731 44.6
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 2.5e-154 550.1 717 44.5
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 2.1e-153 547.0 724 46.8
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.1e-152 543.1 373 78.0
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 1.2e-151 541.2 732 44.0
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 5.9e-151 538.9 526 59.9
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 3.8e-150 536.2 729 45.0
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 6.5e-150 535.4 715 44.6
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 1.2e-148 531.2 728 42.9
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 3.6e-148 529.6 721 44.2
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 7.9e-148 528.5 740 44.3
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 1.8e-147 527.3 720 43.9
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.3e-147 526.9 740 44.2
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 9.1e-144 515.0 742 42.3
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.0e-142 509.2 728 44.1
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.4e-141 507.7 728 44.1
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.4e-139 501.1 724 43.6
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.4e-139 501.1 719 42.7
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.0e-139 500.0 739 42.4
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 6.7e-139 498.8 733 42.8
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 8.8e-139 498.4 739 42.6
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 2.0e-138 497.3 717 43.7
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 9.7e-138 495.0 728 43.5
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 8.2e-137 491.9 741 42.5
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.2e-135 488.0 698 43.8
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.5e-135 487.6 730 43.0
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 3.8e-134 483.0 716 41.8
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 5.0e-134 482.6 738 42.7
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.5e-133 479.2 727 41.0
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 2.7e-132 476.9 719 40.2
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.0e-131 474.9 727 41.4
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.0e-131 473.4 733 41.9
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 3.3e-130 469.9 723 42.5
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 4.4e-130 469.5 718 41.4
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 5.7e-130 469.2 726 40.5
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 9.7e-130 468.4 693 40.7
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.3e-129 468.0 638 42.9
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 1.7e-129 467.6 603 44.9
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.7e-129 467.6 723 40.8
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 4.8e-129 466.1 745 41.6
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 1.1e-128 464.9 712 41.2
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.4e-128 463.8 748 40.0
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.4e-128 463.8 718 40.8
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.1e-128 463.0 750 41.1
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 2.6e-127 460.3 630 43.5
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 7.7e-127 458.8 736 40.4
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 1.0e-126 458.4 717 41.8
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 1.3e-126 458.0 717 41.7
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.8e-126 456.4 642 43.5
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.5e-125 454.5 730 41.8
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.5e-125 454.5 707 41.0
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.0e-123 448.4 717 42.0
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 1.0e-123 448.4 707 40.6
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 8.8e-123 445.3 723 38.5
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 7.5e-122 442.2 792 38.6
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.3e-121 441.4 706 41.2
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.4e-120 438.0 720 40.7
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 3.1e-120 436.8 727 41.3
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 7.0e-120 435.6 706 37.4
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 4.5e-119 433.0 719 39.8
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 6.5e-118 429.1 583 42.7
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 3.6e-116 423.3 723 38.9
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.0e-115 420.2 639 41.5
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 9.1e-112 408.7 589 41.6
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 9.5e-109 398.7 543 44.0
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 3.6e-108 396.7 698 37.7
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 6.1e-108 396.0 700 38.0
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 1.4e-107 394.8 749 37.7
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 4.0e-107 393.3 687 38.0
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 8.8e-107 392.1 713 36.3
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 3.4e-106 390.2 714 37.7
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 4.4e-106 389.8 706 38.4
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 5.7e-106 389.4 634 40.5
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.7e-105 387.9 713 36.3
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 3.1e-104 383.6 591 39.8
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 4.7e-100 369.8 589 39.9
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 4.7e-100 369.8 687 36.4
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 9.8e-98 362.1 751 34.1
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 2.2e-97 360.9 723 35.3
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 1.6e-95 354.8 600 40.0
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 5.0e-94 349.7 648 36.4
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 7.3e-93 345.9 520 41.9
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 2.6e-90 337.4 881 32.0
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 4.4e-90 336.7 585 36.2
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.9e-89 333.2 480 42.3
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 6.0e-87 326.2 408 46.3
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 3.2e-80 303.9 763 33.2
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 7.1e-80 302.8 735 33.1
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 1.7e-78 298.1 469 40.1
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 3.3e-77 293.9 646 33.0
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 3.6e-76 290.4 757 32.5
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.1e-75 288.9 662 34.6
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 4.0e-75 287.0 520 36.2
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 4.1e-72 276.9 460 38.7
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 5.4e-72 276.6 544 38.6
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 1.5e-69 268.5 633 32.2
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.3e-69 266.2 416 39.9
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 6.9e-67 259.6 684 31.1
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 2.0e-66 258.1 667 31.0
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.6e-66 257.7 499 33.9
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.1e-64 252.3 507 35.9
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 1.9e-64 251.5 701 30.4
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.4e-64 251.1 376 39.1
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.2e-63 248.8 604 33.1
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.7e-63 247.7 501 36.7
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.7e-62 242.7 345 40.3
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 4.3e-61 240.4 571 32.0
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 3.0e-46 191.0 431 32.5
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 1.2e-42 179.1 242 42.6
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 2.9e-41 174.5 275 41.1
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 6.5e-41 173.3 101 88.1
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 5.1e-38 163.7 213 44.6
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.5e-37 161.4 221 41.6
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 9.7e-37 159.5 239 39.7
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.8e-36 157.1 429 31.2
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.4e-35 155.6 194 47.4
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.0e-33 147.1 169 47.3
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 3.6e-31 141.0 242 40.5
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.0e-30 139.4 242 36.8
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 3.0e-30 137.9 259 38.2
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 2.5e-29 134.8 448 27.9
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 7.4e-29 133.3 225 40.9
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.7e-28 132.1 238 37.8
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.1e-27 126.3 126 49.2
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 7.7e-26 123.2 327 31.8
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.9e-25 121.3 196 33.7
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.4e-24 119.0 359 29.8
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 3.2e-24 117.9 383 27.7
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.2e-18 99.4 130 40.0
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 2.6e-18 98.2 121 45.5
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 2.2e-17 95.1 127 40.9
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 3.8e-17 94.4 85 52.9
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 3.2e-16 91.3 101 45.5
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 7.2e-16 90.1 82 52.4
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.2e-15 89.4 103 46.6
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 2.0e-13 82.0 318 28.0
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 2.6e-13 81.6 244 29.5
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 9.7e-13 79.7 90 50.0
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.8e-12 78.2 149 36.2
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 6.3e-12 77.0 80 43.8
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 6.3e-12 77.0 90 45.6
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 8.2e-12 76.6 629 23.1
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 5.3e-11 73.9 141 31.9
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 4.5e-10 70.9 636 23.7
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 5.9e-10 70.5 102 38.2
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.5e-09 67.0 105 36.2
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 1.5e-08 65.9 132 34.1
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.2e-08 64.7 75 50.7
Os08g0268900 Oryza sativa ssp. japonica HOM05D004086 ORTHO05D004641 3.0e-06 58.2 115 30.4
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 4.0e-06 57.8 81 43.2


User provided reference genes

Program Settings