Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 2.1e-32 141.7 69 100.0
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 2.1e-32 141.7 69 100.0
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 4.7e-29 130.6 69 91.3
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 8.1e-29 129.8 68 89.7
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 1.1e-28 129.4 68 89.7
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 1.1e-28 129.4 69 89.9
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 1.1e-28 129.4 69 89.9
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 1.1e-28 129.4 66 92.4
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 1.4e-28 129.0 68 89.7
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 1.8e-28 128.6 68 89.7
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 1.8e-28 128.6 69 89.9
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 3.1e-28 127.9 68 88.2
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 3.1e-28 127.9 66 90.9
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 4.0e-28 127.5 68 89.7
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 1.5e-27 125.6 64 92.2
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 2.2e-26 121.7 68 83.8
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 9.2e-25 116.3 69 78.3
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 2.7e-24 114.8 69 79.7
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 3.5e-24 114.4 64 84.4
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 6.0e-24 113.6 69 78.3
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 6.0e-24 113.6 69 76.8
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.3e-23 111.7 69 76.8
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.3e-23 111.7 69 76.8
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.3e-23 111.7 69 76.8
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 3.9e-23 110.9 69 75.4
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 3.9e-23 110.9 70 78.6
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 5.1e-23 110.5 69 73.9
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 6.6e-23 110.2 69 75.4
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 6.6e-23 110.2 69 76.8
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 6.6e-23 110.2 66 77.3
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 1.5e-22 109.0 65 78.5
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 1.5e-22 109.0 68 72.1
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 1.9e-22 108.6 66 75.8
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 1.9e-22 108.6 66 75.8
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 1.9e-22 108.6 66 75.8
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 1.9e-22 108.6 64 82.8
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 1.9e-22 108.6 59 81.4
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 2.5e-22 108.2 64 78.1
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 3.3e-22 107.8 66 74.2
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 3.3e-22 107.8 66 74.2
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 3.3e-22 107.8 66 74.2
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 3.3e-22 107.8 58 84.5
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 3.3e-22 107.8 68 73.5
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 4.3e-22 107.5 64 76.6
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 4.3e-22 107.5 64 76.6
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 5.6e-22 107.1 66 74.2
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 5.6e-22 107.1 66 74.2
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 5.6e-22 107.1 66 74.2
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 5.6e-22 107.1 64 76.6
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 5.6e-22 107.1 68 70.6
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 7.3e-22 106.7 64 75.0
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 7.3e-22 106.7 68 72.1
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 9.6e-22 106.3 58 82.8
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 9.6e-22 106.3 66 75.8
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 9.6e-22 106.3 66 75.8
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 1.2e-21 105.9 58 86.2
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 1.2e-21 105.9 59 81.4
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 1.6e-21 105.5 58 82.8
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 1.6e-21 105.5 64 75.0
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 1.6e-21 105.5 66 75.8
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 1.6e-21 105.5 64 75.0
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 1.6e-21 105.5 66 75.8
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 1.6e-21 105.5 66 74.2
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 1.6e-21 105.5 68 72.1
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 1.6e-21 105.5 59 81.4
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 1.6e-21 105.5 59 81.4
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 2.8e-21 104.8 69 71.0
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 2.8e-21 104.8 68 67.6
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 2.8e-21 104.8 58 79.3
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 3.6e-21 104.4 64 75.0
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 3.6e-21 104.4 58 81.0
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 4.7e-21 104.0 58 82.8
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 4.7e-21 104.0 72 73.6
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 6.2e-21 103.6 69 66.7
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 1.1e-20 102.8 59 79.7
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 1.1e-20 102.8 58 79.3
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 1.1e-20 102.8 66 72.7
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 1.1e-20 102.8 66 72.7
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 1.1e-20 102.8 66 72.7
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.4e-20 101.7 58 77.6
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.4e-20 101.7 58 77.6
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.4e-20 101.7 58 77.6
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.4e-20 101.7 58 77.6
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.4e-20 101.7 58 77.6
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.4e-20 101.7 58 77.6
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 2.4e-20 101.7 58 77.6
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 3.1e-20 101.3 68 66.2
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 5.2e-20 100.5 64 73.4
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 5.2e-20 100.5 58 75.9
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 6.9e-20 100.1 64 70.3
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 6.9e-20 100.1 68 64.7
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 6.9e-20 100.1 58 75.9
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 1.2e-19 99.4 58 79.3
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 3.4e-19 97.8 67 68.7
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 3.4e-19 97.8 68 69.1
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 3.4e-19 97.8 68 69.1
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 3.4e-19 97.8 69 66.7
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 4.4e-19 97.4 58 75.9
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 7.6e-19 96.7 66 66.7
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 2.2e-18 95.1 56 83.9
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 2.9e-18 94.7 64 64.1
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 6.4e-18 93.6 58 70.7
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 1.4e-17 92.4 64 68.8
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 3.2e-17 91.3 55 76.4
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 7.1e-17 90.1 64 65.6
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 7.1e-17 90.1 50 80.0
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 3.5e-16 87.8 55 69.1
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 4.6e-16 87.4 70 65.7
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 7.8e-16 86.7 49 77.6
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 3.0e-15 84.7 57 68.4
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 3.8e-10 67.8 49 65.3
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 1.9e-06 55.5 58 43.1
MD11G1211600 Malus domestica HOM05D007124 ORTHO05D008980 7.4e-06 53.5 37 64.9


User provided reference genes

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