Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 7.8e-107 391.0 277 100.0
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 7.9e-83 311.2 278 65.5
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 9.6e-81 304.3 278 82.4
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 6.9e-79 298.1 277 68.6
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 7.9e-75 284.6 281 67.3
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 2.4e-71 273.1 266 65.4
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 1.5e-70 270.4 274 61.7
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 1.5e-70 270.4 274 62.0
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 1.9e-68 263.5 272 56.6
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 2.7e-67 259.6 276 62.3
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 3.9e-58 229.2 265 52.1
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 3.9e-50 202.6 180 60.6
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 1.3e-48 197.6 180 57.8
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 1.1e-47 194.5 180 56.1
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 3.1e-47 193.0 180 54.4
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 2.6e-46 189.9 180 55.6
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 3.4e-46 189.5 180 56.1
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 4.5e-46 189.1 180 52.8
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 1.0e-45 188.0 180 52.2
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.7e-45 187.2 180 52.8
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 2.2e-45 186.8 180 54.4
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 5.0e-45 185.7 180 54.4
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 2.5e-44 183.3 180 54.4
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 4.2e-44 182.6 177 53.1
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 6.1e-43 178.7 180 51.7
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 1.8e-42 177.2 284 48.6
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 3.0e-42 176.4 180 51.1
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 5.2e-42 175.6 180 52.8
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 2.0e-41 173.7 180 48.9
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 4.4e-41 172.6 177 52.0
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 5.7e-41 172.2 177 52.0
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 7.4e-41 171.8 177 52.5
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 3.7e-40 169.5 177 50.3
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 3.7e-40 169.5 175 52.0
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 1.8e-39 167.2 179 48.0
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 2.4e-39 166.8 177 51.4
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 2.6e-38 163.3 185 49.2
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 4.5e-38 162.5 179 52.5
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 1.0e-37 161.4 164 54.9
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 2.9e-37 159.8 180 45.0
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 2.9e-37 159.8 180 45.0
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 1.5e-36 157.5 180 46.7
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 1.5e-36 157.5 180 46.7
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 9.4e-36 154.8 181 50.3
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.2e-35 154.5 178 46.6
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 2.7e-35 153.3 180 46.1
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 2.7e-35 153.3 161 50.9
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 1.8e-34 150.6 182 47.8
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 1.8e-34 150.6 180 42.8
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 2.3e-34 150.2 182 46.2
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 8.8e-34 148.3 160 50.6
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 2.0e-33 147.1 176 47.7
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 2.6e-33 146.7 182 46.7
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 1.3e-32 144.4 183 44.8
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 2.2e-32 143.7 181 44.8
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 2.8e-32 143.3 226 40.3
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 6.3e-32 142.1 176 46.6
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 6.3e-32 142.1 176 46.6
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 8.2e-32 141.7 148 50.7
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 1.1e-31 141.4 173 49.1
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 4.1e-31 139.4 176 44.9
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 4.1e-31 139.4 176 44.9
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 1.2e-30 137.9 180 41.7
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 1.6e-30 137.5 174 46.0
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 3.5e-30 136.3 176 47.2
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 5.9e-30 135.6 181 45.9
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 2.9e-29 133.3 180 45.6
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 5.0e-29 132.5 174 40.8
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 4.2e-28 129.4 163 46.0
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 1.6e-27 127.5 173 45.7
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 4.7e-27 125.9 123 52.0
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 4.7e-27 125.9 173 46.2
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 4.7e-27 125.9 166 43.4
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 6.1e-27 125.6 132 53.0
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 1.8e-26 124.0 164 43.3
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 5.7e-25 119.0 174 38.5
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 8.3e-24 115.2 174 42.5
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.2e-22 111.3 159 38.4
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 4.5e-22 109.4 176 39.2
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 2.2e-21 107.1 127 44.1
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 6.5e-21 105.5 131 43.5
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 1.5e-20 104.4 132 44.7
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 7.2e-20 102.1 151 41.1
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 1.2e-19 101.3 128 41.4
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 6.1e-19 99.0 131 41.2
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.0e-18 96.7 85 56.5
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 4.0e-18 96.3 132 43.9
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 4.0e-18 96.3 132 43.9
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 5.2e-18 95.9 180 33.9
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 1.2e-17 94.7 180 33.3
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 1.1e-15 88.2 112 45.5
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 1.8e-15 87.4 65 60.0
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 1.6e-14 84.3 229 27.1
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 1.0e-13 81.6 71 56.3
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 2.9e-13 80.1 93 43.0
Zm00001eb203200 Zea mays HOM05D007447 ORTHO05D009372 3.8e-13 79.7 232 28.4
HPP92_005282 Vanilla planifolia HOM05D007447 ORTHO05D009372 7.3e-12 75.5 143 35.7
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 2.0e-09 67.4 139 33.8
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 1.7e-08 64.3 175 27.4
AUR62031072 Chenopodium quinoa HOM05D007447 ORTHO05D009372 1.4e-07 61.2 190 31.1
SEGI_19030 Sequoiadendron giganteum HOM05D002665 ORTHO05D002991 3.5e-06 56.6 64 42.2
Gohir.A01G124600 Gossypium hirsutum HOM05D007447 ORTHO05D009372 7.8e-06 55.5 42 57.1
Gohir.A01G131222 Gossypium hirsutum HOM05D007447 ORTHO05D009372 7.8e-06 55.5 42 57.1


User provided reference genes

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