Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 4.6e-188 661.0 314 100.0
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 6.0e-180 634.0 314 96.2
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 3.6e-177 624.8 314 94.6
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 4.8e-177 624.4 314 93.0
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 2.4e-176 622.1 314 93.6
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 1.3e-171 606.3 314 89.5
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 6.6e-171 604.0 311 90.4
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 8.7e-171 603.6 314 89.5
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 7.3e-170 600.5 314 87.9
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 9.9e-167 590.1 313 87.5
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 9.3e-165 583.6 311 87.1
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 2.7e-164 582.0 311 86.8
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 2.7e-164 582.0 314 86.3
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 2.7e-164 582.0 314 86.3
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 7.9e-164 580.5 313 85.3
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.0e-163 580.1 310 87.4
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 2.3e-163 578.9 308 86.7
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 3.9e-163 578.2 314 86.6
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 5.1e-163 577.8 310 87.1
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 5.1e-163 577.8 314 86.3
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 2.5e-162 575.5 308 86.7
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 2.5e-162 575.5 314 86.0
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 2.5e-162 575.5 310 86.5
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 3.3e-162 575.1 314 85.7
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.3e-162 575.1 314 85.4
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 3.3e-162 575.1 314 85.4
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 5.6e-162 574.3 310 86.5
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 9.6e-162 573.5 311 85.9
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 9.6e-162 573.5 314 85.4
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 9.6e-162 573.5 310 86.5
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.1e-161 572.4 311 85.5
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 2.1e-161 572.4 313 85.6
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 3.7e-161 571.6 311 85.5
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 3.7e-161 571.6 314 84.7
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 4.8e-161 571.2 310 85.8
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 4.8e-161 571.2 311 85.5
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 6.2e-161 570.9 310 86.5
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 8.1e-161 570.5 311 84.6
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 8.1e-161 570.5 312 85.3
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 1.1e-160 570.1 310 85.2
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.1e-160 570.1 311 84.2
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.4e-160 569.7 310 85.8
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 2.4e-160 568.9 310 84.8
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.1e-160 568.5 314 84.7
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 4.0e-160 568.2 312 84.6
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 5.3e-160 567.8 311 84.2
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 5.3e-160 567.8 312 84.3
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 6.9e-160 567.4 310 84.8
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 9.0e-160 567.0 314 84.1
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 9.0e-160 567.0 310 85.8
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 1.5e-159 566.2 311 84.9
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 2.0e-159 565.8 314 84.4
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 2.0e-159 565.8 314 83.8
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 2.6e-159 565.5 312 83.7
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 2.6e-159 565.5 310 84.5
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 2.6e-159 565.5 310 85.2
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 4.5e-159 564.7 314 83.1
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.3e-158 563.1 310 85.2
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 1.3e-158 563.1 312 82.7
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 2.9e-158 562.0 312 83.7
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 2.9e-158 562.0 312 83.7
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 2.9e-158 562.0 312 84.9
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 1.1e-157 560.1 313 83.1
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 1.1e-157 560.1 311 83.9
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.4e-157 559.7 313 83.4
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 1.4e-157 559.7 310 82.9
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 1.9e-157 559.3 317 82.6
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 1.9e-157 559.3 314 82.8
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 2.5e-157 558.9 314 81.8
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 3.2e-157 558.5 314 83.1
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 3.2e-157 558.5 310 84.5
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 4.2e-157 558.1 310 84.2
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 4.2e-157 558.1 314 83.1
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 5.5e-157 557.8 313 82.4
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 7.1e-157 557.4 314 83.4
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 7.1e-157 557.4 313 82.1
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 9.3e-157 557.0 314 82.8
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 2.7e-156 555.4 313 82.4
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 3.5e-156 555.1 308 82.1
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 4.6e-156 554.7 310 81.9
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 4.6e-156 554.7 313 81.2
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 7.9e-156 553.9 312 83.3
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 1.3e-155 553.1 310 81.6
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 1.8e-155 552.7 310 82.6
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 2.3e-155 552.4 311 82.0
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 2.3e-155 552.4 311 82.0
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 2.3e-155 552.4 312 83.0
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 5.1e-155 551.2 300 86.7
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 5.1e-155 551.2 310 82.9
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 6.7e-155 550.8 310 81.9
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 1.1e-154 550.1 314 81.2
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 1.9e-154 549.3 310 81.6
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 1.9e-154 549.3 310 81.6
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 3.3e-154 548.5 310 81.6
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 2.1e-153 545.8 372 71.8
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 2.8e-153 545.4 310 81.3
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 8.2e-153 543.9 313 80.2
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 1.8e-152 542.7 310 80.6
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 1.8e-152 542.7 310 80.6
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 3.1e-152 542.0 312 81.1
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 6.9e-152 540.8 312 81.1
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 9.0e-152 540.4 312 81.1
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 1.5e-151 539.7 330 77.3
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 3.4e-151 538.5 313 78.9
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 3.4e-143 511.9 308 77.6
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 4.2e-141 505.0 289 80.6
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 6.1e-140 501.1 269 87.0
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 6.1e-140 501.1 307 77.9
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 2.0e-138 496.1 311 73.6
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 2.0e-138 496.1 308 75.0
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 4.3e-138 495.0 272 84.2
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 9.1e-136 487.3 306 73.2
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 6.5e-134 481.1 308 71.4
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 2.7e-132 475.7 268 83.2
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 2.3e-131 472.6 309 68.0
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 3.1e-128 462.2 305 69.8
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 3.1e-128 462.2 305 69.8
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 8.5e-126 454.1 338 66.6
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 6.1e-124 448.0 306 67.0
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 5.2e-123 444.9 250 80.4
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 9.4e-117 424.1 308 63.3
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 6.1e-108 394.8 222 83.8
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 2.0e-106 389.8 317 58.4
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 8.6e-94 347.8 214 74.8
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 1.5e-93 347.1 242 67.8
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 5.6e-93 345.1 313 50.5
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 3.1e-83 312.8 347 44.1
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 4.6e-71 272.3 366 40.2
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 1.4e-51 207.6 123 74.0
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 3.7e-28 129.8 89 73.0
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 4.1e-27 126.3 82 78.0
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 5.1e-22 109.4 74 73.0
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 5.3e-19 99.4 66 71.2
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 3.1e-11 73.6 42 76.2
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 5.3e-11 72.8 53 67.9
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 2.6e-10 70.5 41 78.0
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 3.8e-09 66.6 46 69.6
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 2.7e-07 60.5 42 61.9


User provided reference genes

Program Settings