Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 3.9e-99 364.8 182 100.0
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 4.9e-65 251.5 160 80.0
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 5.4e-64 248.1 159 82.4
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 2.6e-50 202.6 160 71.9
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 6.0e-47 191.4 163 63.2
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 1.9e-40 169.9 160 60.6
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 5.4e-40 168.3 155 60.0
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 6.2e-36 154.8 166 54.8
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 3.3e-29 132.5 172 49.4
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 9.6e-29 131.0 172 47.1
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.2e-28 130.6 157 47.1
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.6e-28 130.2 169 43.2
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 5.2e-27 125.2 157 45.2
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 2.0e-26 123.2 172 41.9
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 2.6e-26 122.9 148 52.7
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 9.9e-26 120.9 169 42.6
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 1.3e-25 120.6 172 40.7
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 1.3e-25 120.6 160 43.1
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 2.2e-25 119.8 157 44.6
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 3.8e-25 119.0 169 43.2
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 1.1e-24 117.5 173 41.6
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 1.1e-24 117.5 103 55.3
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.9e-24 116.7 157 43.9
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 3.2e-24 115.9 159 41.5
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 3.2e-24 115.9 166 40.4
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 4.2e-24 115.5 102 54.9
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 1.2e-23 114.0 169 44.4
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-23 113.6 165 43.0
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.6e-23 113.6 129 48.1
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 2.1e-23 113.2 169 43.8
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 2.7e-23 112.8 169 43.8
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 2.7e-23 112.8 165 43.0
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 4.6e-23 112.1 124 48.4
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 7.8e-23 111.3 101 56.4
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 1.0e-22 110.9 157 43.9
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.7e-22 110.2 121 49.6
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 1.7e-22 110.2 170 41.2
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 2.3e-22 109.8 107 54.2
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 6.6e-22 108.2 101 51.5
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 1.5e-21 107.1 180 40.6
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 1.9e-21 106.7 162 42.6
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 2.5e-21 106.3 172 40.1
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.5e-21 106.3 166 41.0
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 2.5e-21 106.3 122 44.3
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 3.3e-21 105.9 121 46.3
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.3e-21 105.9 121 46.3
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.3e-21 105.9 121 46.3
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 4.3e-21 105.5 165 43.0
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 4.3e-21 105.5 99 53.5
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 4.3e-21 105.5 92 55.4
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 7.3e-21 104.8 153 41.2
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 1.3e-20 104.0 178 38.2
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 1.6e-20 103.6 122 45.9
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 1.6e-20 103.6 104 56.7
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.6e-20 102.4 121 45.5
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 4.8e-20 102.1 162 38.9
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 4.8e-20 102.1 162 38.9
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.8e-20 102.1 111 46.8
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 4.8e-20 102.1 153 41.8
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 8.1e-20 101.3 162 38.9
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 8.1e-20 101.3 162 38.9
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 8.1e-20 101.3 173 39.9
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 1.1e-19 100.9 120 44.2
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 1.4e-19 100.5 77 64.9
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 2.4e-19 99.8 173 38.2
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 2.4e-19 99.8 82 59.8
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 4.0e-19 99.0 155 41.9
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 9.0e-19 97.8 120 45.8
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 9.0e-19 97.8 163 40.5
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 1.2e-18 97.4 89 50.6
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 1.2e-18 97.4 161 39.8
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 2.0e-18 96.7 139 41.0
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 2.6e-18 96.3 147 42.2
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 3.4e-18 95.9 120 44.2
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.8e-18 95.1 126 41.3
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.7e-17 93.6 96 50.0
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 2.2e-17 93.2 162 37.7
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 2.9e-17 92.8 120 41.7
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 2.9e-17 92.8 115 45.2
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 6.4e-17 91.7 159 37.7
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 8.4e-17 91.3 151 39.7
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 8.4e-17 91.3 113 45.1
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 1.1e-16 90.9 111 49.5
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.1e-16 90.9 132 41.7
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 2.4e-16 89.7 68 61.8
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 2.4e-16 89.7 174 36.8
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 3.2e-16 89.4 104 50.0
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 4.2e-16 89.0 108 45.4
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 5.4e-16 88.6 154 40.9
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 9.3e-16 87.8 75 52.0
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 9.3e-16 87.8 141 40.4
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 1.6e-15 87.0 66 60.6
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 6.0e-15 85.1 74 56.8
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 6.0e-15 85.1 112 43.8
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 6.0e-15 85.1 81 53.1
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 3.9e-14 82.4 171 36.3
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 5.1e-14 82.0 100 46.0
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 1.1e-13 80.9 74 50.0
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 1.5e-13 80.5 177 32.8
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 4.3e-13 79.0 64 57.8
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 4.3e-13 79.0 71 52.1
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 1.6e-12 77.0 65 55.4
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 2.1e-12 76.6 88 44.3
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 2.8e-12 76.3 103 44.7
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.8e-12 76.3 156 33.3
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 1.1e-11 74.3 64 57.8
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 1.8e-11 73.6 100 41.0
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 2.0e-10 70.1 157 33.1
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 1.7e-09 67.0 100 41.0
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.2e-09 66.6 153 32.0
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.9e-09 66.2 81 40.7
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.9e-09 65.5 140 34.3
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 6.4e-09 65.1 77 40.3
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.1e-08 64.3 103 35.9
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 1.4e-08 63.9 74 40.5
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 9.3e-08 61.2 97 39.2


User provided reference genes

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