Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 9.5e-98 360.1 178 100.0
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 7.0e-93 344.0 175 97.7
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 1.6e-81 306.2 170 88.8
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 1.5e-79 299.7 170 85.9
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 2.2e-78 295.8 172 87.8
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 8.4e-70 267.3 173 78.6
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 2.7e-68 262.3 173 76.9
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 1.6e-65 253.1 171 72.5
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 1.8e-64 249.6 179 72.1
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 4.0e-64 248.4 171 74.3
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 2.0e-63 246.1 179 70.4
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 4.4e-63 245.0 177 68.4
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 2.2e-62 242.7 174 72.4
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 2.9e-62 242.3 175 69.1
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 3.8e-62 241.9 177 65.5
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.9e-61 239.6 179 67.0
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 4.2e-61 238.4 176 67.0
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 4.2e-61 238.4 178 65.2
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 7.1e-61 237.7 161 71.4
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 9.3e-61 237.3 177 68.4
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 1.2e-60 236.9 176 67.6
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.6e-60 236.5 174 67.8
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 2.1e-60 236.1 175 67.4
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 2.1e-60 236.1 191 66.5
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 2.7e-60 235.7 178 65.7
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 3.5e-60 235.3 175 64.0
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 3.5e-60 235.3 176 67.0
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 3.5e-60 235.3 177 67.8
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.0e-59 233.8 178 65.2
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.7e-59 233.0 178 63.5
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 2.3e-59 232.6 178 65.2
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 3.9e-59 231.9 179 64.2
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 5.1e-59 231.5 177 65.5
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 8.7e-59 230.7 177 66.1
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 1.5e-58 229.9 157 69.4
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 1.5e-58 229.9 176 67.6
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 1.9e-58 229.6 175 64.0
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 1.9e-58 229.6 176 66.5
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 5.6e-58 228.0 177 67.2
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 5.6e-58 228.0 174 66.7
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 7.3e-58 227.6 174 68.4
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.3e-57 226.9 174 68.4
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.3e-57 226.9 174 67.8
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 2.8e-57 225.7 174 68.4
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 2.8e-57 225.7 176 65.9
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 2.8e-57 225.7 169 66.3
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 3.6e-57 225.3 160 68.1
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 3.6e-57 225.3 181 64.6
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 4.8e-57 224.9 160 68.1
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 8.1e-57 224.2 181 63.0
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 1.1e-56 223.8 175 62.9
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 3.1e-56 222.2 177 64.4
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 5.3e-56 221.5 173 61.3
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 6.9e-56 221.1 160 68.1
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 6.9e-56 221.1 174 63.8
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.2e-55 220.3 177 63.3
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.2e-55 220.3 162 64.8
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 1.5e-55 219.9 162 64.8
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 2.0e-55 219.5 175 61.1
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 2.0e-55 219.5 181 59.7
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 2.0e-55 219.5 162 65.4
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 2.6e-55 219.2 157 66.9
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 4.5e-55 218.4 174 64.9
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 4.5e-55 218.4 162 64.2
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 7.6e-55 217.6 183 63.4
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 7.6e-55 217.6 176 61.9
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 1.3e-54 216.9 174 60.9
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 3.8e-54 215.3 183 62.8
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 8.4e-54 214.2 175 61.1
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 1.4e-53 213.4 185 60.0
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 2.4e-53 212.6 174 63.2
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 2.4e-53 212.6 175 63.4
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 2.4e-53 212.6 175 63.4
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 2.4e-53 212.6 162 64.2
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 2.4e-53 212.6 182 57.1
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 7.1e-53 211.1 171 63.2
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 7.1e-53 211.1 172 63.4
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 1.6e-52 209.9 162 63.0
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 3.5e-52 208.8 181 61.9
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 4.6e-52 208.4 183 59.0
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 1.0e-51 207.2 176 60.2
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.0e-51 207.2 159 63.5
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.0e-51 207.2 159 63.5
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 1.3e-51 206.8 176 60.8
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 2.3e-51 206.1 164 61.6
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 5.1e-51 204.9 181 56.4
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 5.1e-51 204.9 173 61.8
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 5.1e-51 204.9 175 60.0
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 2.5e-50 202.6 173 61.3
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 2.5e-50 202.6 152 67.1
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 1.6e-49 199.9 179 54.2
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 1.6e-49 199.9 175 54.3
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 2.1e-49 199.5 165 59.4
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 6.2e-49 198.0 173 61.8
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 8.1e-49 197.6 174 61.5
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 4.0e-48 195.3 188 56.4
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 9.9e-47 190.7 178 56.7
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 8.4e-46 187.6 183 54.6
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 2.3e-43 179.5 172 54.1
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 2.3e-43 179.5 175 52.6
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 1.5e-42 176.8 183 53.6
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 4.3e-42 175.3 217 45.6
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 4.8e-41 171.8 179 51.4
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 1.4e-40 170.2 170 52.4
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 2.4e-40 169.5 228 43.9
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 3.1e-40 169.1 184 48.9
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 5.3e-40 168.3 182 48.9
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 1.3e-38 163.7 140 60.7
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 3.8e-38 162.2 131 60.3
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 1.1e-37 160.6 173 52.6
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 2.1e-36 156.4 173 46.8
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 4.6e-36 155.2 214 44.4
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 7.9e-36 154.5 181 47.0
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 1.0e-35 154.1 177 47.5
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 6.7e-35 151.4 134 58.2
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 4.8e-33 145.2 186 44.6
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 3.1e-32 142.5 112 64.3
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 1.2e-28 130.6 84 67.9
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 8.8e-27 124.4 134 47.8
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 8.2e-25 117.9 95 60.0
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 3.1e-24 115.9 90 60.0
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 5.5e-21 105.1 178 37.1
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.5e-18 97.1 110 44.5
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 2.0e-18 96.7 154 39.0
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 3.3e-18 95.9 152 36.2
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 7.4e-18 94.7 108 49.1
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 9.7e-18 94.4 75 64.0
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 9.1e-16 87.8 77 59.7
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.5e-15 87.0 134 41.0
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 1.5e-15 87.0 134 44.0
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 2.6e-15 86.3 58 65.5
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 1.2e-12 77.4 174 28.7
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 1.8e-11 73.6 104 47.1
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 3.9e-11 72.4 44 70.5
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 3.7e-09 65.9 85 48.2
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 6.3e-09 65.1 53 62.3
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 1.2e-07 60.8 45 62.2
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.0e-07 60.1 41 63.4


User provided reference genes

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