Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 4.2e-170 601.3 305 100.0
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 5.3e-165 584.3 305 97.0
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 1.9e-162 575.9 305 92.5
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 4.2e-162 574.7 305 94.8
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 5.5e-162 574.3 305 94.4
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 4.6e-161 571.2 305 94.1
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 1.8e-160 569.3 305 93.4
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.9e-159 565.8 305 93.8
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 4.3e-159 564.7 305 92.8
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 1.6e-158 562.8 305 89.5
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 2.0e-156 555.8 305 90.8
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 5.9e-156 554.3 305 90.5
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 5.9e-156 554.3 305 90.5
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 3.8e-155 551.6 305 87.2
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 5.7e-151 537.7 305 84.6
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 9.7e-151 537.0 305 88.2
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 9.7e-151 537.0 305 87.2
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 1.3e-150 536.6 305 87.2
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 2.8e-150 535.4 305 86.2
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 2.8e-150 535.4 305 87.9
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 2.8e-150 535.4 305 84.3
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.8e-150 535.4 305 84.3
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 2.8e-150 535.4 305 85.6
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 3.7e-150 535.0 305 84.3
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 4.8e-150 534.6 305 85.9
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 8.2e-150 533.9 304 86.8
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.1e-149 533.5 305 85.6
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 1.1e-149 533.5 305 83.6
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 82.6
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 84.3
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 2.4e-149 532.3 305 85.2
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.4e-149 532.3 305 85.6
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 4.1e-149 531.6 305 83.9
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 86.6
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 84.9
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 1.5e-148 529.6 307 82.4
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 2.0e-148 529.3 305 84.3
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 2.0e-148 529.3 305 84.3
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.4e-148 528.5 305 83.0
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 85.2
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 85.9
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 4.5e-148 528.1 301 87.4
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 83.3
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 85.2
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.3e-147 526.6 305 81.0
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 83.3
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 83.3
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 81.0
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 5.0e-147 524.6 305 83.3
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 82.0
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 4.2e-146 521.5 301 86.4
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 4.2e-146 521.5 305 81.6
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 83.9
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 81.6
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 82.6
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 81.0
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.7e-145 518.8 305 80.7
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 2.7e-145 518.8 305 82.3
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 80.0
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 80.3
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 81.6
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 82.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 82.0
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 80.7
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 84.3
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 82.0
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 80.3
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 82.0
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.8e-144 516.2 305 82.3
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 82.6
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 80.3
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 80.3
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 81.0
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 3.9e-144 515.0 303 83.5
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 5.2e-144 514.6 300 84.3
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.1e-143 513.5 305 79.7
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 79.3
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 7.4e-143 510.8 302 83.4
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 3.7e-142 508.4 305 82.3
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.7e-142 508.4 302 80.1
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 6.3e-142 507.7 326 77.3
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 1.6e-140 503.1 305 79.0
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 2.6e-140 502.3 307 80.8
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 2.6e-140 502.3 305 78.4
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 5.9e-140 501.1 330 74.2
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 2.5e-138 495.7 303 76.6
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 7.2e-138 494.2 305 80.0
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 9.4e-138 493.8 305 80.0
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.2e-137 493.4 305 79.3
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 1.6e-137 493.0 372 67.7
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 2.7e-137 492.3 308 76.9
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.0e-136 490.3 304 79.3
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 1.4e-136 490.0 303 79.2
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 3.0e-136 488.8 305 76.7
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.7e-134 483.0 307 74.6
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 6.3e-134 481.1 307 75.6
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 6.3e-134 481.1 305 79.0
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 2.4e-133 479.2 306 74.5
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 2.4e-133 479.2 306 74.5
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 2.4e-133 479.2 306 74.5
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 2.4e-133 479.2 304 77.0
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 2.4e-133 479.2 304 77.0
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 3.1e-133 478.8 307 73.6
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 4.1e-133 478.4 307 73.9
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 9.1e-133 477.2 307 74.9
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 1.2e-132 476.9 306 74.5
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 1.6e-132 476.5 304 76.3
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 4.5e-132 474.9 305 74.1
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 5.9e-132 474.6 388 64.9
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 7.7e-132 474.2 304 76.3
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.5e-119 433.3 304 67.8
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 3.7e-118 428.7 300 69.0
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 1.1e-117 427.2 306 67.3
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 9.2e-117 424.1 304 65.8
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 2.7e-116 422.5 305 70.5
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.0e-112 410.6 246 82.9
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 1.2e-111 407.1 302 63.9
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 7.8e-108 394.4 235 83.0
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 4.0e-104 382.1 303 62.0
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.6e-100 370.2 225 82.2
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 8.6e-99 364.4 225 76.9
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 2.8e-97 359.4 310 57.7
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 3.2e-93 345.9 228 77.6
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 1.5e-90 337.0 207 77.8
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 3.5e-68 262.7 160 77.5
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.5e-66 257.3 181 70.2
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 4.8e-65 252.3 143 83.2
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 4.9e-62 242.3 149 75.2
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 6.0e-60 235.3 154 73.4
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 6.7e-59 231.9 153 70.6
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 4.5e-55 219.2 300 47.3
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 3.4e-39 166.4 80 93.8
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 1.7e-38 164.1 80 93.8
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 2.2e-38 163.7 299 35.1
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.9e-38 163.3 125 63.2
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.5e-37 160.2 205 48.3
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 5.5e-37 159.1 89 80.9
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 7.2e-37 158.7 136 53.7
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 9.4e-37 158.3 79 89.9
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 2.1e-36 157.1 306 35.0
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 6.7e-35 152.1 80 83.8
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.9e-29 134.0 79 79.7
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 4.4e-26 122.9 58 96.6
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 2.4e-24 117.1 83 65.1
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 2.6e-23 113.6 60 86.7
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 1.6e-20 104.4 64 76.6
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 5.7e-18 95.9 296 30.7
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.2e-17 94.0 69 78.3
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 3.2e-13 80.1 237 26.6


User provided reference genes

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