Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 0.0e+00 1140.2 649 100.0
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 4.0e-255 884.8 709 73.8
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 1.0e-237 827.0 687 73.2
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.8e-207 726.5 679 65.4
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 1.5e-193 680.2 633 67.0
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 4.0e-178 629.0 704 58.4
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 2.7e-174 616.3 692 58.7
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 1.9e-172 610.1 691 58.9
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 3.3e-172 609.4 695 57.3
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 8.1e-171 604.7 736 54.5
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 2.2e-152 543.5 615 59.0
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 6.6e-149 531.9 678 54.9
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 2.6e-105 387.1 713 42.2
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 1.0e-104 385.2 736 41.6
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 1.3e-104 384.8 743 41.6
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 3.2e-103 380.2 697 43.3
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 4.2e-103 379.8 697 43.3
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 1.4e-101 374.8 727 41.1
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.6e-100 370.5 705 42.7
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.1e-98 365.2 704 41.5
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.8e-98 364.4 744 40.3
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 2.2e-96 357.5 706 42.2
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 3.8e-96 356.7 730 40.5
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 1.6e-94 351.3 677 39.7
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 6.7e-93 345.9 724 38.0
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 1.7e-91 341.3 699 40.8
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 2.8e-91 340.5 702 40.5
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 1.4e-90 338.2 671 40.7
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 1.3e-88 331.6 724 39.9
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 4.7e-86 323.2 535 44.9
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 4.0e-85 320.1 550 43.8
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 8.8e-85 318.9 484 46.5
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 2.0e-84 317.8 726 37.6
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 4.4e-84 316.6 708 36.9
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 9.8e-84 315.5 753 37.2
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 5.4e-82 309.7 702 38.7
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 5.4e-82 309.7 655 40.2
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 5.4e-82 309.7 678 37.8
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 2.0e-81 307.8 604 42.1
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.3e-80 305.1 703 38.5
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 3.2e-79 300.4 687 37.8
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 2.0e-76 291.2 661 39.0
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 3.4e-76 290.4 763 35.5
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 9.8e-76 288.9 747 36.0
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.7e-75 287.0 763 34.2
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 4.5e-73 280.0 715 33.8
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 5.9e-73 279.6 533 42.6
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 7.7e-73 279.3 604 37.7
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 1.3e-72 278.5 315 55.6
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.8e-72 276.9 778 33.3
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.3e-69 267.7 717 35.3
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 8.9e-69 265.8 713 34.8
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 2.6e-68 264.2 660 35.9
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 7.5e-68 262.7 711 34.7
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 2.2e-67 261.2 695 35.4
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 2.4e-66 257.7 658 36.8
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 7.0e-66 256.1 714 33.2
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 1.6e-65 255.0 658 35.4
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.6e-65 255.0 725 34.3
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.3e-64 251.9 782 32.7
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 1.5e-63 248.4 541 38.4
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 1.9e-63 248.1 662 35.2
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 3.6e-62 243.8 667 35.7
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 4.7e-62 243.4 604 36.6
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 6.2e-62 243.0 678 35.1
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 1.0e-61 242.3 790 33.5
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 1.4e-61 241.9 678 35.3
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.4e-61 241.9 717 32.6
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 1.8e-61 241.5 706 35.3
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 1.5e-60 238.4 712 33.1
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 3.4e-60 237.3 722 33.4
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 4.4e-60 236.9 723 32.8
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 5.8e-60 236.5 675 35.6
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 2.9e-59 234.2 693 33.9
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 3.7e-59 233.8 723 32.6
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 8.3e-59 232.6 707 33.8
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 1.4e-58 231.9 692 32.7
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 3.2e-58 230.7 713 31.6
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 5.4e-58 229.9 700 32.6
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 9.2e-58 229.2 709 32.7
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 4.6e-57 226.9 709 33.7
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 1.0e-56 225.7 507 37.1
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 8.6e-56 222.6 509 37.1
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 7.3e-55 219.5 792 30.8
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 1.2e-54 218.8 631 35.3
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.6e-54 218.4 511 36.8
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.6e-54 218.4 666 35.0
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 4.7e-54 216.9 555 35.7
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.1e-53 215.7 646 33.0
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 3.1e-53 214.2 540 37.2
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 5.2e-53 213.4 718 31.3
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 1.2e-52 212.2 664 34.0
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 1.5e-52 211.8 204 61.3
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 5.8e-52 209.9 221 56.1
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 3.7e-51 207.2 663 32.6
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 6.4e-51 206.5 665 33.4
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 8.3e-51 206.1 718 33.1
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 8.3e-51 206.1 792 30.3
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 2.4e-50 204.5 334 44.3
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.4e-50 204.5 320 44.4
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 9.2e-50 202.6 699 31.8
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 2.1e-49 201.4 255 49.8
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 9.5e-47 192.6 823 28.3
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 3.4e-44 184.1 785 29.3
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 9.9e-44 182.6 734 29.2
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 1.3e-43 182.2 680 30.4
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 9.2e-42 176.0 484 35.5
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 2.7e-41 174.5 637 30.6
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 1.3e-40 172.2 649 31.1
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.7e-38 163.7 636 31.3
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 4.4e-36 157.1 529 31.6
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 2.4e-34 151.4 544 31.6
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 7.3e-31 139.8 511 31.9
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 5.8e-28 130.2 394 35.3
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 5.8e-28 130.2 507 29.6
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 7.6e-28 129.8 133 56.4
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.3e-27 129.0 622 29.9
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 1.9e-26 125.2 74 79.7
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 1.6e-25 122.1 345 36.5
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 4.0e-21 107.5 119 58.0
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 9.3e-18 96.3 79 59.5
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 3.9e-16 90.9 140 46.4
VMungo0540G0411 Vigna mungo HOM05D004882 ORTHO05D005551 1.3e-11 75.9 118 46.6
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.8e-11 74.3 297 30.3
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 4.9e-11 73.9 152 38.2
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 1.4e-10 72.4 74 51.4
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 3.5e-09 67.8 40 72.5
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.3e-08 65.9 66 54.5
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 1.3e-08 65.9 66 54.5
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.3e-07 61.2 325 28.9
Zm00001eb090710 Zea mays HOM05D004882 ORTHO05D005551 4.3e-07 60.8 161 34.8
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 3.7e-06 57.8 79 39.2
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 8.2e-06 56.6 159 31.4


User provided reference genes

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