Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 2300.0 1258 100.0
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1996.1 1235 84.9
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1903.3 1244 81.8
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1853.6 1206 79.9
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1833.9 1193 80.6
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1832.8 1266 77.3
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1820.8 1235 77.4
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1798.5 1267 75.5
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1738.0 1251 75.5
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1726.5 1214 74.3
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1718.7 1300 73.8
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1695.6 1231 72.8
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1546.2 1180 68.1
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1536.9 1206 67.7
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1535.0 1189 68.3
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1531.2 1252 64.4
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1530.8 1218 65.8
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1515.7 1211 65.4
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1513.0 1239 66.7
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1508.4 1215 66.1
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1506.9 1289 64.4
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1505.7 1218 65.8
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1501.5 1209 65.4
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1499.6 1216 65.5
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1498.4 1211 65.5
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1498.0 1216 65.6
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1492.6 1206 66.7
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1489.9 1232 63.9
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1488.4 1211 65.6
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1486.5 1200 66.4
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1485.3 1243 63.4
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1484.9 1203 67.1
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1484.2 1210 65.7
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1483.4 1184 66.0
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1481.1 1246 63.6
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1480.3 1209 65.3
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1479.2 1244 65.2
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1472.2 1208 64.7
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1470.7 1194 64.3
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1468.8 1221 65.4
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1463.4 1217 67.1
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1459.5 1195 65.6
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1455.3 1228 63.6
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1453.0 1219 62.8
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1447.2 1200 63.4
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1443.7 1179 63.6
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1442.9 1242 62.6
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1440.6 1226 62.7
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1440.2 1229 63.4
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1437.6 1181 65.2
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1434.9 1239 62.8
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1426.4 1201 62.9
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1426.0 1219 61.4
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1425.6 1263 62.5
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1422.1 1180 63.5
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1419.4 1275 60.4
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1413.3 1213 61.8
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1407.9 1206 62.5
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1405.2 1196 62.5
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1396.7 1171 65.4
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1394.8 1216 61.5
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1394.4 1213 62.4
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1379.0 1198 59.7
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1369.0 1218 62.2
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1368.6 1180 61.9
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1367.4 1197 59.2
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1363.6 1170 62.2
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1363.2 1205 60.8
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1360.1 1226 60.8
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1356.3 1157 62.1
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1354.3 1218 59.6
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1351.3 1213 60.3
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1349.7 1228 60.5
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1349.7 1228 60.5
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1347.8 1217 59.9
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1337.0 1202 59.5
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1336.6 1192 60.1
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1333.2 1232 60.0
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1332.0 1239 58.7
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1330.9 1191 60.5
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1325.1 1207 61.1
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1323.9 1211 60.0
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1322.0 1200 61.3
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1315.1 1193 60.2
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1315.1 1193 60.2
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1303.9 1221 58.7
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1291.2 1208 58.5
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1289.6 1238 56.9
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1286.9 1243 55.9
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1280.8 1200 58.3
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1280.4 1235 56.8
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1251.5 1075 60.8
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1233.0 1213 55.5
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1226.8 1175 56.3
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1199.5 1176 57.3
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1184.5 1198 56.3
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1166.0 1188 54.1
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1154.4 1182 53.5
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1124.4 1200 49.8
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1121.3 1205 52.6
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1105.9 1059 58.3
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1091.6 1265 49.2
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1088.6 1192 51.1
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1085.1 946 62.4
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 6.1e-300 1034.6 1200 48.2
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 1.2e-298 1030.4 1240 47.7
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 2.2e-294 1016.1 1221 48.3
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 1.4e-272 943.7 719 68.4
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 1.6e-244 850.5 594 73.1
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 4.3e-237 825.9 1217 42.9
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 3.1e-219 766.5 1108 42.2
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 1.7e-169 601.3 429 69.2
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 2.9e-164 583.9 537 61.5
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 3.5e-154 550.4 875 43.9
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 4.0e-150 537.0 1204 32.3
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 4.0e-150 537.0 1227 33.7
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 2.6e-149 534.3 1215 32.2
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 9.8e-149 532.3 1202 33.5
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 2.4e-147 527.7 689 49.8
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 1.5e-144 518.5 452 62.8
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 3.0e-137 494.2 443 59.1
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 5.1e-137 493.4 609 47.5
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 7.3e-128 463.0 1214 30.9
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 1.3e-127 462.2 1203 30.3
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 4.2e-115 420.6 1051 32.5
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 1.8e-105 388.7 1046 31.3
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 2.8e-95 354.8 1225 26.4
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 2.0e-80 305.4 328 52.1
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 2.2e-76 292.0 247 62.8
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 2.0e-69 268.9 504 36.9
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.0e-68 266.5 504 36.5
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 1.4e-46 193.0 1172 23.3
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.4e-41 176.4 217 49.3
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 7.0e-38 164.1 1274 23.5
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 2.0e-37 162.5 98 83.7
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 4.9e-31 141.4 129 56.6
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 4.9e-31 141.4 348 31.0
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 5.6e-27 127.9 138 52.2
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 9.9e-24 117.1 112 62.5
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 4.3e-19 101.7 147 42.9
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.6e-18 98.6 121 47.1
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 3.6e-18 98.6 187 34.8
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.1e-17 97.1 54 87.0
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 4.0e-17 95.1 61 77.0
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 2.0e-16 92.8 60 78.3
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 2.0e-16 92.8 60 78.3
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 5.4e-14 84.7 81 51.9
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 3.0e-12 79.0 101 48.5
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 3.0e-12 79.0 83 42.2
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 5.1e-12 78.2 191 31.4
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 2.1e-10 72.8 91 49.5
Glyma.11G134400 Glycine max HOM05D033723 ORTHO05D214704 4.8e-10 71.6 60 66.7
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 8.1e-10 70.9 73 49.3
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 8.1e-10 70.9 72 50.0
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 7.6e-08 64.3 40 72.5
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 1.1e-06 60.5 41 70.7
Glyma.07G215100 Glycine max HOM05D005611 ORTHO05D006852 5.4e-06 58.2 36 72.2


User provided reference genes

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