Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 6.7e-268 926.8 467 100.0
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 5.5e-246 854.0 467 91.9
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 4.8e-242 840.9 467 90.4
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.4e-241 838.6 467 90.8
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 3.0e-228 795.0 467 85.0
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.1e-227 793.1 471 85.8
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 2.8e-226 788.5 471 85.4
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 3.1e-225 785.0 469 84.0
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 1.7e-223 779.2 474 83.8
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 1.6e-221 772.7 471 82.4
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 7.3e-198 694.1 473 75.1
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.8e-196 689.5 471 74.9
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 2.3e-196 689.1 471 75.2
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.1e-196 688.7 471 75.2
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 5.2e-196 688.0 471 75.2
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 6.8e-196 687.6 471 75.6
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 6.8e-196 687.6 432 79.6
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 8.9e-196 687.2 462 76.4
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.5e-195 686.4 442 77.4
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 1.5e-195 686.4 472 75.2
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 3.4e-195 685.3 472 76.7
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 1.7e-194 682.9 472 75.0
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.7e-194 682.9 471 74.5
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 1.7e-194 682.9 471 74.7
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 3.7e-194 681.8 471 74.9
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 2.4e-193 679.1 460 75.4
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 9.2e-193 677.2 457 75.1
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.2e-192 676.8 471 74.9
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 2.7e-192 675.6 459 73.9
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 2.7e-192 675.6 470 73.6
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.7e-192 675.6 446 75.8
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.6e-192 674.9 453 75.7
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 6.0e-192 674.5 470 73.0
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 7.8e-192 674.1 461 75.5
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 7.8e-192 674.1 473 73.4
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 7.8e-192 674.1 473 73.6
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.0e-191 673.7 470 73.0
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 1.7e-191 672.9 458 74.7
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.3e-191 672.5 457 74.8
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 3.0e-191 672.2 467 72.2
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 5.0e-191 671.4 473 73.2
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 7.3e-190 667.5 471 72.0
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 1.2e-189 666.8 458 74.2
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 1.6e-189 666.4 454 73.6
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.6e-189 666.4 461 74.4
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 2.8e-189 665.6 471 73.0
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 6.2e-189 664.5 448 75.0
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 8.0e-189 664.1 448 74.6
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 8.0e-189 664.1 453 74.0
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 1.1e-188 663.7 471 72.2
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.8e-188 662.9 451 74.3
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 2.3e-188 662.5 473 71.9
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 5.2e-188 661.4 461 74.0
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 6.8e-188 661.0 458 73.6
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 6.8e-188 661.0 458 73.6
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 8.9e-188 660.6 472 71.2
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 1.5e-187 659.8 458 73.4
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 2.6e-187 659.1 470 71.7
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 4.4e-187 658.3 458 73.1
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 5.8e-187 657.9 468 71.6
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 5.8e-187 657.9 458 73.1
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.3e-186 656.8 459 72.8
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 8.3e-186 654.1 443 74.5
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.1e-185 653.7 454 72.0
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.4e-185 653.3 466 72.1
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 1.9e-185 652.9 440 74.5
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.4e-185 652.5 462 73.6
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 3.2e-185 652.1 452 72.1
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 5.4e-185 651.4 464 73.5
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 7.1e-185 651.0 472 71.2
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 1.6e-184 649.8 475 70.3
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 1.6e-184 649.8 454 72.5
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 3.5e-184 648.7 466 71.5
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 4.6e-184 648.3 456 73.0
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.6e-184 648.3 473 71.7
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 4.6e-184 648.3 456 72.6
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 4.6e-184 648.3 456 72.6
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 6.0e-184 647.9 467 71.1
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 6.0e-184 647.9 459 72.5
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 2.3e-183 646.0 471 71.1
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 3.9e-183 645.2 471 70.5
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 1.1e-182 643.7 469 71.9
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 6.2e-181 637.9 442 74.2
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 8.1e-181 637.5 475 69.3
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 1.1e-180 637.1 454 73.1
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 1.4e-180 636.7 461 71.6
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 1.4e-180 636.7 471 69.6
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 3.1e-180 635.6 472 71.4
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 4.0e-180 635.2 453 72.2
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.5e-179 633.3 469 67.4
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 2.9e-178 629.0 468 69.9
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 6.4e-178 627.9 483 67.9
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 8.3e-178 627.5 461 70.5
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.9e-177 626.3 422 73.9
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.9e-177 626.3 422 73.9
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.1e-177 625.2 427 73.3
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 1.2e-176 623.6 448 71.2
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 3.5e-176 622.1 461 69.8
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 3.6e-173 612.1 459 68.2
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 6.8e-172 607.8 468 66.7
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.7e-170 603.2 472 66.7
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 1.1e-169 600.5 492 64.2
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.5e-168 595.5 472 66.5
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 7.8e-168 594.3 581 57.8
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 6.6e-167 591.3 436 68.6
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 9.6e-166 587.4 450 67.1
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 9.6e-166 587.4 432 68.8
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 3.6e-165 585.5 467 65.3
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 8.1e-165 584.3 435 68.5
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 2.4e-164 582.8 467 65.3
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 4.4e-163 578.6 385 75.3
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 9.9e-163 577.4 467 64.9
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.9e-162 575.9 461 65.7
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 2.7e-160 569.3 466 65.5
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 1.1e-158 563.9 474 63.1
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 1.1e-158 563.9 459 64.5
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.0e-155 553.1 401 67.6
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 4.5e-155 552.0 432 66.9
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.3e-151 540.4 468 62.0
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 4.2e-145 518.8 386 69.2
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 5.1e-143 511.9 412 67.0
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 3.3e-142 509.2 469 60.6
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 9.6e-142 507.7 457 57.5
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 1.2e-139 500.7 366 70.5
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 7.9e-136 488.0 352 68.8
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 6.7e-135 485.0 369 67.2
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 1.1e-132 477.6 449 56.3
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 4.5e-131 472.2 415 60.0
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 5.9e-131 471.9 451 56.1
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.0e-130 471.1 457 56.0
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.7e-130 470.3 467 55.9
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 8.8e-119 431.4 395 58.5
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 5.3e-116 422.2 310 69.0
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 2.2e-114 416.8 262 80.2
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 7.5e-102 375.2 338 61.5
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 8.0e-96 355.1 308 60.7
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 5.0e-90 335.9 258 65.5
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 5.2e-87 325.9 197 81.2
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.2e-83 314.7 212 74.1
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 3.5e-83 313.2 213 75.1
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 3.5e-75 286.6 441 41.7
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 2.5e-65 253.8 181 71.8
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 5.1e-50 203.0 155 71.6
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 2.8e-48 197.2 157 67.5
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 5.3e-39 166.4 207 47.3
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 4.6e-35 153.3 156 54.5
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 7.4e-33 146.0 148 55.4
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 3.4e-22 110.5 61 90.2
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 7.2e-12 76.3 56 62.5


User provided reference genes

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