Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 0.0e+00 1101.3 557 100.0
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 2.7e-284 981.5 558 88.4
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 3.0e-283 978.0 557 88.2
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 1.6e-281 972.2 557 87.6
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 7.7e-279 963.4 559 86.8
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 1.0e-275 953.0 560 87.0
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 2.6e-266 921.8 557 84.2
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 1.4e-256 889.4 559 81.4
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 1.6e-252 875.9 561 80.2
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 3.0e-251 871.7 559 80.1
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 1.7e-246 855.9 560 78.0
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 3.8e-246 854.7 560 78.2
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 1.1e-245 853.2 562 78.8
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 2.6e-242 842.0 557 77.9
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 1.5e-234 816.2 562 77.6
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 3.4e-234 815.1 569 73.1
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 2.2e-233 812.4 568 72.7
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 9.2e-232 807.0 568 72.5
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 1.6e-228 796.2 571 72.0
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 2.8e-228 795.4 571 72.0
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 1.0e-227 793.5 571 72.0
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 1.2e-226 790.0 571 71.1
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 5.8e-226 787.7 567 72.1
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 2.2e-225 785.8 540 73.1
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 1.9e-224 782.7 575 70.8
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.4e-224 782.3 568 71.5
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 4.1e-224 781.6 568 70.2
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 9.2e-224 780.4 571 70.2
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 2.0e-223 779.2 568 70.8
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 2.3e-222 775.8 569 71.4
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 3.9e-222 775.0 573 69.5
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 8.6e-222 773.9 572 71.2
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.2e-220 770.0 573 70.7
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.2e-220 770.0 564 70.7
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 1.6e-220 769.6 571 70.2
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.8e-220 768.8 573 70.5
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 2.8e-220 768.8 499 76.6
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 3.6e-220 768.5 571 69.0
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 3.6e-220 768.5 568 69.5
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 3.1e-219 765.4 567 69.1
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 4.0e-219 765.0 573 69.6
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 1.5e-218 763.1 570 67.9
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 1.5e-218 763.1 569 69.6
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.0e-218 762.7 568 69.4
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 3.4e-218 761.9 541 71.7
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 4.4e-218 761.5 569 69.2
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 5.8e-218 761.1 568 69.4
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 9.8e-218 760.4 571 69.2
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 2.9e-217 758.8 569 69.2
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 3.7e-217 758.4 569 68.5
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 3.7e-217 758.4 561 70.4
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 6.4e-217 757.7 568 68.5
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 8.3e-217 757.3 561 70.2
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 8.3e-217 757.3 506 73.7
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.9e-216 756.1 567 68.4
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 4.1e-216 755.0 567 69.0
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.2e-215 753.4 567 68.4
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 6.0e-215 751.1 571 67.8
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.7e-214 749.6 567 67.9
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 5.1e-214 748.0 561 70.1
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 8.6e-214 747.3 567 67.9
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 2.8e-212 742.3 574 67.4
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 1.7e-209 733.0 568 66.5
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 1.4e-208 729.9 570 67.0
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 1.4e-208 729.9 570 67.2
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 3.2e-208 728.8 573 65.1
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 7.1e-208 727.6 505 73.3
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.7e-207 725.7 559 67.6
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 2.7e-207 725.7 558 67.4
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 4.6e-207 724.9 575 65.4
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 6.0e-207 724.5 505 72.5
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 2.3e-206 722.6 559 66.9
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 3.0e-206 722.2 505 72.9
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 1.5e-205 719.9 563 66.8
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.5e-205 719.2 568 66.0
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 7.3e-205 717.6 553 66.9
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 1.2e-204 716.8 576 64.1
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.2e-204 716.8 560 66.8
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 2.1e-204 716.1 505 71.1
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 3.6e-204 715.3 568 65.7
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 4.7e-204 714.9 503 72.4
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 3.1e-203 712.2 503 71.0
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.5e-202 709.9 573 64.0
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 2.6e-202 709.1 554 66.2
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 8.4e-201 704.1 567 65.4
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 2.4e-200 702.6 564 65.2
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 5.4e-200 701.4 573 66.5
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 1.9e-197 693.0 568 63.6
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 1.3e-196 690.3 513 67.1
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 1.3e-196 690.3 563 65.0
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 2.1e-196 689.5 429 78.6
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 1.8e-195 686.4 570 63.9
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 1.5e-194 683.3 561 64.2
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 1.5e-194 683.3 568 63.6
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 5.8e-194 681.4 572 62.4
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 1.1e-192 677.2 563 63.6
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 4.2e-192 675.2 571 63.9
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 5.4e-192 674.9 505 67.1
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 1.2e-191 673.7 558 64.7
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 3.5e-191 672.2 562 63.9
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 6.0e-191 671.4 568 63.2
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.0e-190 670.6 563 62.9
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.0e-190 670.6 544 64.2
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 5.1e-190 668.3 557 63.4
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 8.7e-190 667.5 588 61.2
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.1e-187 660.6 585 60.7
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 2.4e-187 659.4 560 63.0
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 4.0e-187 658.7 556 60.8
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.7e-185 653.3 573 62.0
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 2.9e-185 652.5 573 59.3
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 3.1e-179 632.5 423 73.8
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 1.2e-178 630.6 571 59.4
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 9.3e-176 620.9 574 58.5
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 1.1e-173 614.0 516 61.0
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 6.5e-169 598.2 569 56.1
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 6.1e-167 591.7 506 63.6
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 1.0e-166 590.9 522 58.6
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 1.1e-165 587.4 351 80.1
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 8.5e-161 571.2 436 64.2
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.3e-156 557.4 384 69.3
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 6.1e-143 511.9 520 50.4
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 2.3e-142 510.0 544 51.1
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 1.5e-133 480.7 527 49.0
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 1.3e-132 477.6 484 55.4
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 2.2e-124 450.3 537 44.5
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 2.2e-124 450.3 553 48.3
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 1.0e-121 441.4 258 79.8
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.4e-115 421.0 468 54.7
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 4.1e-115 419.5 440 50.2
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.1e-112 411.4 547 46.1
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 4.7e-103 379.4 503 45.9
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 4.0e-94 349.7 318 59.4
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.6e-90 337.8 308 56.5
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 1.0e-89 335.1 469 41.8
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 1.3e-79 301.6 379 48.5
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 1.9e-75 287.7 333 44.4
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 2.9e-68 263.8 328 40.9
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 2.8e-63 247.3 576 35.8
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 8.1e-63 245.7 235 57.4
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 2.1e-42 177.9 239 45.6
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 2.6e-32 144.4 632 23.3
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 2.6e-32 144.4 154 54.5
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 3.0e-17 94.4 92 62.0
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 3.8e-12 77.4 86 52.3
Ca_17126_v3 Cicer arietinum L. HOM05D008547 ORTHO05D010515 5.7e-08 63.5 60 61.7
Ca_15277_v3 Cicer arietinum L. HOM05D008547 ORTHO05D010515 6.3e-07 60.1 60 58.3
Mapoly0032s0048 Marchantia polymorpha HOM05D012385 ORTHO05D014380 5.4e-06 57.0 144 29.9


User provided reference genes

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