Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 3.5e-51 204.9 122 100.0
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 6.9e-15 84.3 77 61.0
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 2.4e-12 75.9 45 77.8
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.2e-11 73.6 80 55.0
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 4.6e-11 71.6 73 56.2
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.9e-11 70.9 49 75.5
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.1e-09 67.0 44 75.0
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 1.1e-09 67.0 116 39.7
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.5e-09 66.6 43 69.8
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.9e-09 66.2 65 58.5
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 2.5e-09 65.9 84 52.4
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.5e-09 65.9 87 43.7
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 2.5e-09 65.9 46 71.7
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 3.3e-09 65.5 46 69.6
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 5.6e-09 64.7 109 44.0
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 7.4e-09 64.3 46 63.0
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 7.4e-09 64.3 46 63.0
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 7.4e-09 64.3 46 63.0
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 7.4e-09 64.3 46 63.0
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 7.4e-09 64.3 98 46.9
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 7.4e-09 64.3 79 50.6
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 7.4e-09 64.3 79 50.6
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 7.4e-09 64.3 41 78.0
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 7.4e-09 64.3 41 75.6
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 7.4e-09 64.3 47 63.8
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 9.6e-09 63.9 87 42.5
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 9.6e-09 63.9 120 38.3
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 9.6e-09 63.9 41 75.6
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.3e-08 63.5 117 40.2
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.6e-08 63.2 42 69.0
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 1.6e-08 63.2 42 69.0
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 1.6e-08 63.2 42 69.0
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 1.6e-08 63.2 42 69.0
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 1.6e-08 63.2 42 69.0
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.6e-08 63.2 47 66.0
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.6e-08 63.2 79 50.6
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 1.6e-08 63.2 46 60.9
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.6e-08 63.2 45 68.9
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.6e-08 63.2 47 66.0
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.1e-08 62.8 47 61.7
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 2.1e-08 62.8 46 60.9
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 2.8e-08 62.4 42 69.0
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 2.8e-08 62.4 95 41.1
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.8e-08 62.4 45 71.1
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.7e-08 62.0 73 46.6
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 3.7e-08 62.0 45 68.9
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 3.7e-08 62.0 87 42.5
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 3.7e-08 62.0 61 57.4
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 4.8e-08 61.6 41 65.9
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 4.8e-08 61.6 47 66.0
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 4.8e-08 61.6 41 65.9
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 4.8e-08 61.6 77 48.1
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 4.8e-08 61.6 59 55.9
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 6.2e-08 61.2 45 64.4
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 6.2e-08 61.2 41 75.6
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 8.1e-08 60.8 64 54.7
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 8.1e-08 60.8 45 66.7
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 8.1e-08 60.8 46 65.2
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.1e-07 60.5 45 66.7
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.1e-07 60.5 45 68.9
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.1e-07 60.5 45 68.9
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.1e-07 60.5 81 45.7
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.4e-07 60.1 59 59.3
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.4e-07 60.1 46 60.9
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 1.4e-07 60.1 41 70.7
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.8e-07 59.7 62 59.7
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.8e-07 59.7 45 66.7
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 2.4e-07 59.3 86 44.2
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.4e-07 59.3 67 53.7
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.4e-07 59.3 41 75.6
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 3.1e-07 58.9 42 61.9
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.1e-07 58.9 87 44.8
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 3.1e-07 58.9 77 42.9
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.1e-07 58.9 73 52.1
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 3.1e-07 58.9 38 78.9
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 3.1e-07 58.9 38 78.9
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.1e-07 58.9 117 38.5
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.0e-07 58.5 39 71.8
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 5.3e-07 58.2 45 66.7
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 5.3e-07 58.2 46 63.0
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 6.9e-07 57.8 65 53.8
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 6.9e-07 57.8 47 68.1
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 6.9e-07 57.8 41 70.7
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.9e-07 57.8 44 61.4
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.9e-07 57.8 44 61.4
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 6.9e-07 57.8 55 63.6
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 6.9e-07 57.8 45 64.4
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 9.0e-07 57.4 49 65.3
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 9.0e-07 57.4 73 42.5
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 9.0e-07 57.4 45 66.7
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.2e-06 57.0 75 49.3
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.2e-06 57.0 36 72.2
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.2e-06 57.0 63 55.6
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.5e-06 56.6 85 43.5
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.5e-06 56.6 83 43.4
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.5e-06 56.6 41 68.3
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 2.0e-06 56.2 42 73.8
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 2.0e-06 56.2 45 66.7
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.0e-06 56.2 45 66.7
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 2.6e-06 55.8 82 42.7
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 2.6e-06 55.8 62 51.6
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.6e-06 55.8 53 56.6
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.6e-06 55.8 85 45.9
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 2.6e-06 55.8 89 40.4
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 3.4e-06 55.5 53 56.6
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 4.5e-06 55.1 90 41.1
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.5e-06 55.1 40 70.0
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 4.5e-06 55.1 47 57.4
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 4.5e-06 55.1 63 52.4
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 4.5e-06 55.1 37 67.6
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 4.5e-06 55.1 41 65.9
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.8e-06 54.7 39 66.7
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 5.8e-06 54.7 79 41.8
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 7.6e-06 54.3 45 60.0
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 7.6e-06 54.3 59 57.6


User provided reference genes

Program Settings