Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 4.5e-155 551.2 275 100.0
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 2.2e-130 469.2 275 84.4
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 3.7e-125 451.8 281 81.9
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 1.1e-121 440.3 282 78.7
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 7.2e-121 437.6 280 78.9
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 8.8e-119 430.6 280 78.2
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 2.8e-117 425.6 280 77.5
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 5.4e-116 421.4 278 77.0
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 4.0e-111 405.2 287 73.2
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 9.8e-102 374.0 252 73.4
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 4.9e-101 371.7 272 69.5
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 4.9e-101 371.7 279 67.7
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 6.3e-101 371.3 284 67.6
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 6.3e-101 371.3 281 66.9
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 2.4e-100 369.4 275 67.6
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 7.0e-100 367.9 284 67.6
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 2.0e-99 366.3 287 65.9
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 7.8e-99 364.4 252 71.8
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 1.0e-98 364.0 283 68.2
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 2.9e-98 362.5 241 72.6
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 2.9e-98 362.5 276 66.7
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 3.9e-98 362.1 286 65.4
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 5.0e-98 361.7 280 66.1
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 1.5e-97 360.1 280 65.7
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 1.5e-97 360.1 287 64.1
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 1.5e-97 360.1 252 67.5
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 2.5e-97 359.4 224 77.7
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 2.5e-97 359.4 280 65.7
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 3.3e-97 359.0 286 65.0
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 7.3e-97 357.8 278 65.8
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 9.5e-97 357.5 281 67.6
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 1.6e-96 356.7 282 63.8
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 1.6e-96 356.7 271 66.4
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 2.1e-96 356.3 271 66.4
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 2.8e-96 355.9 286 63.6
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 3.6e-96 355.5 281 66.5
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 8.0e-96 354.4 285 62.5
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.8e-95 353.2 257 67.3
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 1.8e-95 353.2 249 69.1
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 3.1e-95 352.4 247 70.9
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 4.0e-95 352.1 282 62.4
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 5.2e-95 351.7 245 70.2
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 2.6e-94 349.4 248 69.4
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 2.6e-94 349.4 245 66.5
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 5.8e-94 348.2 263 66.5
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 7.5e-94 347.8 283 64.3
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 9.8e-94 347.4 283 64.0
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 1.7e-93 346.7 277 61.4
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 2.2e-93 346.3 245 65.7
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 3.7e-93 345.5 222 70.3
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 4.9e-93 345.1 276 63.4
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 6.4e-93 344.7 249 69.1
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 6.4e-93 344.7 271 62.7
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 6.4e-93 344.7 280 69.6
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 1.1e-92 344.0 249 68.3
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 2.4e-92 342.8 223 70.0
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 3.2e-92 342.4 243 66.3
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 4.1e-92 342.0 249 68.3
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 2.0e-91 339.7 263 66.2
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 6.0e-91 338.2 278 60.8
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.0e-90 337.4 283 59.4
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 1.7e-90 336.7 245 66.5
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 2.3e-90 336.3 218 70.2
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 2.3e-90 336.3 249 67.9
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 3.9e-90 335.5 252 67.1
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 8.6e-90 334.3 249 68.3
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 8.6e-90 334.3 234 70.5
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 5.6e-89 331.6 230 69.1
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 1.2e-88 330.5 217 71.0
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 2.1e-88 329.7 272 60.3
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 3.6e-88 328.9 308 55.8
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 6.2e-88 328.2 222 68.9
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 1.8e-87 326.6 243 67.5
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 2.3e-87 326.2 234 69.2
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 8.9e-87 324.3 219 68.5
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 1.5e-86 323.6 220 69.1
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 2.6e-86 322.8 247 64.0
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 1.7e-85 320.1 220 69.1
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 2.2e-85 319.7 242 66.5
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.9e-85 319.3 210 72.4
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.9e-85 319.3 229 67.7
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 6.4e-85 318.2 284 59.2
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 1.4e-84 317.0 248 65.3
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.4e-84 317.0 241 67.2
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 1.9e-84 316.6 227 66.1
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 5.4e-84 315.1 245 66.9
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.2e-83 313.9 291 59.1
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.6e-83 313.5 210 71.0
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 1.3e-82 310.5 219 72.1
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 1.5e-81 307.0 241 61.8
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 1.5e-81 307.0 241 61.8
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 2.5e-81 306.2 250 63.2
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 3.3e-81 305.8 241 61.4
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 3.3e-81 305.8 241 61.4
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 6.2e-80 301.6 307 54.4
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 8.1e-80 301.2 183 78.7
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 1.1e-79 300.8 217 69.6
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 1.4e-79 300.4 311 55.0
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 1.2e-78 297.4 241 59.8
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.9e-76 290.0 249 60.2
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 4.1e-76 288.9 222 65.3
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 1.2e-75 287.3 224 65.6
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.5e-75 285.8 225 65.3
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 7.8e-75 284.6 190 72.6
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 8.6e-74 281.2 225 64.9
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 7.3e-73 278.1 169 78.1
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 2.6e-70 269.6 262 55.7
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 2.4e-68 263.1 216 65.3
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 2.4e-68 263.1 176 72.7
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 1.6e-67 260.4 166 74.1
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 3.0e-66 256.1 260 55.4
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 7.9e-59 231.5 232 49.6
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 8.1e-56 221.5 210 51.0
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 3.1e-55 219.5 236 50.8
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 6.9e-55 218.4 208 50.5
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 3.4e-54 216.1 146 71.9
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 2.2e-53 213.4 133 75.2
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 3.9e-50 202.6 225 44.9
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 2.5e-44 183.3 223 43.9
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 2.3e-42 176.8 117 76.9
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 8.7e-42 174.9 147 63.9
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 3.7e-40 169.5 106 74.5
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 8.5e-29 131.7 189 33.9
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 3.3e-25 119.8 86 61.6
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 1.3e-24 117.9 80 67.5
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 1.1e-23 114.8 80 65.0
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 9.1e-23 111.7 91 64.8
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 1.5e-22 110.9 212 34.0
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.6e-22 110.2 130 47.7
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 4.5e-22 109.4 72 72.2
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 7.9e-19 98.6 71 62.0
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 7.4e-17 92.0 83 51.8
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 3.1e-15 86.7 90 51.1
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 3.3e-09 66.6 61 52.5
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 4.4e-09 66.2 47 66.0
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 2.8e-08 63.5 42 71.4
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 4.5e-06 56.2 49 53.1
Thhalv10029279m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 7.7e-06 55.5 58 53.4


User provided reference genes

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