Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00110_v3 Cicer arietinum L. HOM05D007736 ORTHO05D009783 8.8e-236 820.1 470 100.0
Psat1g218640 Pisum sativum HOM05D007736 ORTHO05D009783 5.7e-142 508.4 415 66.3
Medtr2g008130 Medicago truncatula HOM05D007736 ORTHO05D009783 1.5e-139 500.4 415 67.2
Phvul.006G209200 Phaseolus vulgaris HOM05D007736 ORTHO05D009783 7.0e-124 448.4 429 61.8
Glyma.15G050700 Glycine max HOM05D007736 ORTHO05D009783 6.5e-122 441.8 423 62.2
arahy.Tifrunner.gnm1.ann1.JZ71MD Arachis hypogaea HOM05D007736 ORTHO05D009783 5.0e-114 415.6 425 57.6
arahy.Tifrunner.gnm1.ann1.40XV2D Arachis hypogaea HOM05D007736 ORTHO05D009783 8.6e-114 414.8 425 57.6
VMungo0540G1970 Vigna mungo HOM05D007736 ORTHO05D009783 4.4e-110 402.5 429 57.8
Glyma.08G181600 Glycine max HOM05D007736 ORTHO05D009783 9.2e-108 394.8 426 58.2
TPR.G19753 Trifolium pratense HOM05D007736 ORTHO05D009783 2.8e-104 383.3 381 57.2
Lj6g0003665 Lotus japonicus HOM05D007736 ORTHO05D009783 1.6e-99 367.5 444 51.8
Lalb_Chr20g0123201 Lupinus albus HOM05D007736 ORTHO05D009783 2.3e-87 327.0 446 49.8
Cpa.g.sc2.48 Carica papaya HOM05D007736 ORTHO05D009783 2.6e-62 243.8 396 40.7
CiPaw.05G040000 Carya illinoinensis HOM05D007736 ORTHO05D009783 1.3e-58 231.5 399 40.4
Eucgr.I02697 Eucalyptus grandis HOM05D007736 ORTHO05D009783 6.7e-58 229.2 268 48.9
TAR625G1059 Trochodendron aralioides HOM05D007736 ORTHO05D009783 1.1e-57 228.4 409 40.1
Dinv19331 Davidia involucrata HOM05D007736 ORTHO05D009783 8.1e-56 222.2 436 38.3
TWI14G1332 Tripterygium wilfordii HOM05D007736 ORTHO05D009783 5.3e-55 219.5 405 40.7
Cfa021836 Carpinus fangiana HOM05D007736 ORTHO05D009783 2.0e-54 217.6 407 38.8
Haze_10792 Corylus avellana HOM05D007736 ORTHO05D009783 3.4e-54 216.9 407 39.1
Potri.015G008200 Populus trichocarpa HOM05D007736 ORTHO05D009783 5.8e-54 216.1 402 39.1
Sed0025125 Sechium edule HOM05D007736 ORTHO05D009783 7.6e-54 215.7 421 38.2
CsaV3_7G022310 Cucumis sativus L. HOM05D007736 ORTHO05D009783 6.5e-53 212.6 434 37.6
MELO3C028798.2 Cucumis melo HOM05D007736 ORTHO05D009783 3.2e-52 210.3 434 37.6
ClCG09G014560 Citrullus lanatus HOM05D007736 ORTHO05D009783 7.1e-52 209.1 433 36.5
COL.COLO4_20877 Corchorus olitorius HOM05D007736 ORTHO05D009783 8.7e-50 202.2 265 46.0
Sabra15G0006300 Salix brachista HOM05D007736 ORTHO05D009783 1.6e-48 198.0 403 37.5
Sed0013332 Sechium edule HOM05D007736 ORTHO05D009783 1.1e-47 195.3 248 44.4
Dinv24237 Davidia involucrata HOM05D007736 ORTHO05D009783 3.4e-46 190.3 374 38.0
Lj5P244T47 Lonicera japonica HOM05D007736 ORTHO05D009783 4.5e-46 189.9 415 34.7
Manes.04G057900 Manihot esculenta HOM05D007736 ORTHO05D009783 7.6e-46 189.1 364 37.6
QL11p018598 Quercus lobata HOM05D007736 ORTHO05D009783 1.7e-45 188.0 329 38.3
Thecc.02G144400 Theobroma cacao HOM05D007736 ORTHO05D009783 2.2e-45 187.6 414 35.7
Potri.012G020400 Populus trichocarpa HOM05D007736 ORTHO05D009783 1.9e-44 184.5 402 36.6
PGR142G3153 Punica granatum HOM05D007736 ORTHO05D009783 3.2e-44 183.7 255 40.4
Sabra12G0012700 Salix brachista HOM05D007736 ORTHO05D009783 7.1e-44 182.6 404 36.1
vmacro01801 Vaccinium macrocarpon HOM05D007736 ORTHO05D009783 1.3e-40 171.8 458 32.3
Actinidia38961 Actinidia chinensis HOM05D007736 ORTHO05D009783 1.6e-40 171.4 439 32.8
Cc02_g21990 Coffea canephora HOM05D007736 ORTHO05D009783 3.4e-38 163.7 323 37.5
Rhsim11G0133400 Rhododendron simsii HOM05D007736 ORTHO05D009783 5.0e-37 159.8 313 36.4
Hund21796 Selenicereus undatus HOM05D007736 ORTHO05D009783 1.4e-34 151.8 278 37.1
Ciclev10028677m.g Citrus clementina HOM05D007736 ORTHO05D009783 1.3e-32 145.2 254 38.6
Nitab4.5_0000249g0440 Nicotiana tabacum HOM05D007736 ORTHO05D009783 4.8e-32 143.3 307 34.2
PGSC0003DMG400029771 Solanum tuberosum HOM05D007736 ORTHO05D009783 1.1e-31 142.1 276 36.6
Prupe.7G056800 Prunus persica HOM05D007736 ORTHO05D009783 1.4e-31 141.7 152 48.0
HanXRQChr16g0514111 Helianthus annuus HOM05D007736 ORTHO05D009783 1.8e-31 141.4 272 38.2
Lsat_1_v5_gn_5_106541 Lactuca sativa HOM05D007736 ORTHO05D009783 3.1e-31 140.6 266 37.6
Sopen01g047310 Solanum pennellii HOM05D007736 ORTHO05D009783 5.3e-31 139.8 259 37.1
EL10Ac4g09677 Beta vulgaris HOM05D007736 ORTHO05D009783 3.4e-30 137.1 288 35.8
Ah.06g188730 Amaranthus hybridus HOM05D007736 ORTHO05D009783 5.9e-30 136.3 310 33.5
Solyc01g104790.4 Solanum lycopersicum HOM05D007736 ORTHO05D009783 5.9e-30 136.3 275 35.6
AUR62006887 Chenopodium quinoa HOM05D007736 ORTHO05D009783 1.0e-29 135.6 317 34.1
Nitab4.5_0014357g0010 Nicotiana tabacum HOM05D007736 ORTHO05D009783 1.3e-29 135.2 299 33.4
Prupe.6G356600 Prunus persica HOM05D007736 ORTHO05D009783 3.8e-29 133.7 154 47.4
AUR62000538 Chenopodium quinoa HOM05D007736 ORTHO05D009783 5.0e-29 133.3 338 33.4
MD12G1255900 Malus domestica HOM05D007736 ORTHO05D009783 8.5e-29 132.5 162 44.4
Actinidia00233 Actinidia chinensis HOM05D007736 ORTHO05D009783 1.9e-28 131.3 260 34.6
MD04G1236600 Malus domestica HOM05D007736 ORTHO05D009783 1.9e-28 131.3 167 44.3
FAN09G0667 Fragaria x ananassa HOM05D007736 ORTHO05D009783 4.2e-28 130.2 149 45.6
FAN14G5928 Fragaria x ananassa HOM05D007736 ORTHO05D009783 4.2e-28 130.2 149 47.0
FAN05G0537 Fragaria x ananassa HOM05D007736 ORTHO05D009783 5.5e-28 129.8 149 46.3
RcHm_v2.0_Chr3g0448601 Rosa chinensis HOM05D007736 ORTHO05D009783 7.2e-28 129.4 149 46.3
Sc16g0009620 Simmondsia chinensis HOM05D007736 ORTHO05D009783 1.2e-27 128.6 275 34.9
MSTRG.27826 Avicennia marina HOM05D007736 ORTHO05D009783 1.6e-27 128.3 279 34.1
FvH4_6g01062 Fragaria vesca HOM05D000868 ORTHO05D000711 2.1e-27 127.9 149 46.3
FAN02G1431 Fragaria x ananassa HOM05D007736 ORTHO05D009783 4.7e-27 126.7 150 46.0
DCAR_021830 Daucus carota HOM05D007736 ORTHO05D009783 6.1e-27 126.3 247 34.4
FAN05G0165 Fragaria x ananassa HOM05D007736 ORTHO05D009783 6.1e-27 126.3 149 45.6
Atru.chr6.1122 Acer truncatum HOM05D007736 ORTHO05D009783 2.8e-24 117.5 372 32.3
Nn1g06123 Nelumbo nucifera HOM05D007736 ORTHO05D009783 2.8e-24 117.5 454 25.8
CAN.G523.104 Capsicum annuum HOM05D007736 ORTHO05D009783 6.3e-24 116.3 309 30.4
ECA234G2384 Erigeron canadensis HOM05D007736 ORTHO05D009783 6.3e-24 116.3 274 34.3
unitig_26.g9583 Utricularia gibba HOM05D007736 ORTHO05D009783 6.3e-24 116.3 143 43.4
TAR381G1413 Trochodendron aralioides HOM05D007736 ORTHO05D009783 9.1e-23 112.5 96 56.2
MSTRG.5252 Avicennia marina HOM05D007736 ORTHO05D009783 2.0e-22 111.3 279 32.6
Migut.N01016 Erythranthe guttata HOM05D007736 ORTHO05D009783 5.5e-20 103.2 201 32.8
Aqoxy4G00650 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 1.6e-19 101.7 402 27.1
Aqoxy5G02135 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 2.1e-19 101.3 429 27.3
HanXRQChr10g0289121 Helianthus annuus HOM05D007736 ORTHO05D009783 6.7e-18 96.3 250 32.4
ATR0772G143 Amborella trichopoda HOM05D007736 ORTHO05D009783 1.7e-16 91.7 325 26.8
CDE02G1981 Ceratophyllum demersum HOM05D007736 ORTHO05D009783 4.1e-15 87.0 254 28.0
SGA_v2.0_scaffold45G17286 Striga asiatica HOM05D007736 ORTHO05D009783 3.2e-12 77.4 279 28.3
Os06g0468400 Oryza sativa ssp. japonica HOM05D007736 ORTHO05D009783 2.6e-09 67.8 118 34.7
Zm00001eb382360 Zea mays HOM05D007736 ORTHO05D009783 5.4e-07 60.1 135 31.9


User provided reference genes

Program Settings