Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.0e-109 399.1 198 100.0
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.0e-109 399.1 198 100.0
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 4.7e-98 361.3 198 88.9
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 8.9e-97 357.1 198 87.4
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 9.2e-94 347.1 198 84.8
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 2.7e-93 345.5 198 83.8
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.3e-92 343.2 198 82.8
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 1.3e-92 343.2 198 82.8
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 3.9e-92 341.7 198 82.8
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 9.6e-91 337.0 198 80.3
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 2.1e-90 335.9 198 80.3
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 1.1e-86 323.6 198 78.3
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 2.7e-85 318.9 198 77.3
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 2.3e-84 315.8 198 75.3
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.1e-83 313.5 198 74.2
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.9e-83 312.8 198 74.7
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 9.6e-83 310.5 198 74.2
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 9.6e-83 310.5 198 75.3
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 1.3e-82 310.1 198 75.3
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 1.6e-82 309.7 198 73.7
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.6e-82 309.7 198 74.7
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 2.8e-82 308.9 198 72.7
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 3.6e-82 308.5 198 72.7
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 6.2e-82 307.8 198 74.2
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 1.1e-81 307.0 199 74.9
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 2.4e-81 305.8 198 72.7
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 4.0e-81 305.1 198 71.7
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 5.3e-81 304.7 198 70.7
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 5.3e-81 304.7 198 71.2
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 6.9e-81 304.3 198 72.2
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 9.0e-81 303.9 198 73.2
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.2e-80 303.5 199 72.9
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 1.5e-80 303.1 170 85.3
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.0e-80 302.8 198 72.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 2.0e-80 302.8 198 72.7
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 2.6e-80 302.4 198 70.2
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 2.6e-80 302.4 198 71.7
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 3.4e-80 302.0 198 71.7
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 4.4e-80 301.6 198 72.7
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 2.2e-79 299.3 198 70.2
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 2.2e-79 299.3 198 69.7
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 2.2e-79 299.3 198 69.7
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.2e-79 299.3 198 72.7
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 2.9e-79 298.9 198 72.7
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 2.9e-79 298.9 198 69.7
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 3.8e-79 298.5 198 69.2
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 68.7
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 71.2
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 68.7
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.4e-78 296.6 200 72.0
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 1.9e-78 296.2 198 71.7
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 2.4e-78 295.8 217 68.7
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 3.2e-78 295.4 198 69.7
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.2e-78 295.4 198 72.7
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.2e-78 295.4 198 72.7
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 4.2e-78 295.0 198 68.7
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 4.2e-78 295.0 198 68.7
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.4e-78 294.7 198 72.2
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 70.2
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 1.2e-77 293.5 198 68.7
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.2e-77 293.5 206 67.5
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 68.2
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 2.1e-77 292.7 200 69.5
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 68.2
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.7e-77 292.4 198 71.2
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.5e-77 292.0 206 67.0
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 6.0e-77 291.2 198 69.2
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 7.9e-77 290.8 198 68.7
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 7.9e-77 290.8 198 69.7
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 68.2
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 68.2
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 68.2
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 3.0e-76 288.9 198 67.7
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 3.0e-76 288.9 198 69.7
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 3.9e-76 288.5 198 68.2
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 66.7
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.9e-75 286.2 198 67.2
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.9e-75 286.2 198 66.2
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 3.3e-75 285.4 198 68.7
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 4.3e-75 285.0 198 67.7
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 9.6e-75 283.9 198 67.2
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 1.3e-74 283.5 219 62.6
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 1.3e-74 283.5 198 68.2
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 2.8e-74 282.3 216 63.0
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 3.6e-74 282.0 241 59.3
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.8e-74 281.6 198 66.7
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.4e-73 279.3 234 59.8
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 3.1e-73 278.9 234 59.4
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 5.3e-73 278.1 176 75.6
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 2.0e-72 276.2 170 75.9
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 2.6e-72 275.8 198 66.2
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 5.8e-72 274.6 253 55.7
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 2.9e-71 272.3 198 64.6
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 2.9e-71 272.3 233 58.8
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 1.9e-70 269.6 236 56.4
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 1.3e-68 263.5 171 70.2
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 3.9e-68 261.9 198 64.6
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.1e-67 260.4 198 62.6
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 4.3e-67 258.5 173 69.9
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 9.0e-65 250.8 180 64.4
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 1.2e-64 250.4 191 63.4
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 3.4e-64 248.8 198 61.1
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 5.8e-64 248.1 188 64.9
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 6.5e-63 244.6 198 63.6
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 2.1e-61 239.6 198 56.1
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 7.9e-61 237.7 155 71.6
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 1.0e-60 237.3 160 70.6
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 2.4e-57 226.1 167 64.7
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.0e-55 220.7 198 57.1
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 2.9e-55 219.2 135 77.0
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 3.8e-55 218.8 120 85.8
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 4.2e-54 215.3 145 67.6
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 3.5e-53 212.2 198 50.0
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 1.8e-52 209.9 198 49.0
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 1.6e-50 203.4 197 48.7
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 1.8e-49 199.9 196 49.0
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 6.9e-49 198.0 130 70.8
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 2.1e-45 186.4 130 69.2
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 2.1e-45 186.4 160 55.0
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 6.1e-45 184.9 185 55.1
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 6.7e-44 181.4 137 56.9
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 4.3e-43 178.7 143 61.5
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.3e-42 177.2 111 77.5
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 2.2e-42 176.4 115 72.2
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.2e-40 170.6 115 67.8
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 1.4e-38 163.7 87 81.6
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 9.4e-38 161.0 143 55.2
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 1.1e-35 154.1 142 51.4
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.2e-32 144.1 115 52.2
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.6e-32 143.7 115 52.2
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 2.1e-29 133.3 77 83.1
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 2.1e-29 133.3 145 43.4
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 8.0e-29 131.3 97 70.1
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 5.7e-27 125.2 115 54.8
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 4.1e-25 119.0 77 77.9
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 5.3e-25 118.6 145 52.4
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 9.1e-25 117.9 77 76.6
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 5.9e-24 115.2 77 75.3
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 5.9e-24 115.2 77 74.0
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 3.8e-23 112.5 94 62.8
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 1.1e-22 110.9 77 71.4
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 1.1e-22 110.9 77 71.4
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 2.5e-22 109.8 65 86.2
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 3.2e-22 109.4 69 78.3
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.7e-21 106.3 77 66.2
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 2.7e-21 106.3 82 59.8
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 8.0e-21 104.8 99 52.5
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 8.0e-21 104.8 81 65.4
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 2.6e-19 99.8 72 68.1
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 5.7e-19 98.6 67 68.7
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 7.5e-19 98.2 75 65.3
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 2.0e-16 90.1 46 95.7
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 3.5e-16 89.4 60 71.7
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 1.3e-15 87.4 55 69.1
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 2.1e-13 80.1 64 59.4
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 8.8e-12 74.7 119 35.3
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 1.2e-11 74.3 55 54.5
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 2.0e-11 73.6 63 47.6
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 2.6e-11 73.2 191 24.1
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 3.1e-09 66.2 56 51.8
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 4.1e-09 65.9 190 36.3
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.4e-09 65.5 61 52.5
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 3.5e-08 62.8 51 58.8
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 4.5e-08 62.4 56 48.2
Lsat_1_v5_gn_4_104380 Lactuca sativa HOM05D001722 ORTHO05D048310 1.9e-06 57.0 39 56.4


User provided reference genes

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