Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 1.6e-249 865.5 422 100.0
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 2.2e-209 732.3 419 84.5
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 4.8e-209 731.1 422 82.7
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 6.5e-206 720.7 419 83.1
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 1.2e-202 709.9 419 81.9
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 9.8e-202 706.8 422 80.8
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 1.3e-201 706.4 422 81.0
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 3.7e-201 704.9 419 82.1
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 3.8e-198 694.9 419 80.0
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.1e-192 676.8 419 77.1
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 3.2e-192 675.2 419 76.8
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 9.2e-192 673.7 419 77.6
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 5.9e-191 671.0 420 77.1
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 1.9e-189 666.0 424 75.7
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 3.3e-189 665.2 420 76.9
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 5.6e-189 664.5 420 76.4
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 7.0e-184 647.5 419 73.5
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.2e-183 646.7 419 73.3
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 1.7e-182 642.9 419 72.1
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 6.6e-182 641.0 419 73.0
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.5e-181 639.8 419 72.1
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 1.9e-181 639.4 419 72.3
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 7.3e-181 637.5 419 72.6
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 2.8e-180 635.6 419 72.1
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 3.6e-180 635.2 419 73.0
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 4.7e-180 634.8 419 71.8
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 6.2e-180 634.4 422 72.3
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 3.1e-179 632.1 419 72.8
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.0e-179 631.7 419 71.6
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.0e-179 631.7 419 71.6
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 1.2e-178 630.2 418 72.7
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 2.0e-178 629.4 419 71.4
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.0e-178 629.4 419 71.4
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 5.8e-178 627.9 419 71.1
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 7.5e-178 627.5 419 72.3
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.7e-177 626.3 419 72.1
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 6.4e-177 624.4 419 70.9
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 6.4e-177 624.4 419 70.9
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 8.3e-177 624.0 419 71.6
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 1.1e-176 623.6 419 71.4
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 1.1e-176 623.6 419 71.6
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.4e-176 623.2 419 70.9
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.4e-176 623.2 419 71.8
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.4e-176 622.5 419 71.8
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 3.2e-176 622.1 419 71.6
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 9.2e-176 620.5 419 70.4
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 1.2e-175 620.2 419 70.9
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.6e-175 619.8 419 70.4
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 2.7e-175 619.0 419 71.1
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 6.0e-175 617.8 419 70.2
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 6.0e-175 617.8 419 70.9
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 1.3e-174 616.7 419 69.5
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 3.0e-174 615.5 419 69.0
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 3.9e-174 615.1 419 70.2
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 8.6e-174 614.0 419 69.2
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 8.6e-174 614.0 419 70.4
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 4.7e-172 608.2 403 72.7
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 8.1e-172 607.4 420 69.5
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 2.4e-171 605.9 418 69.6
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 2.6e-170 602.4 418 69.6
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 1.3e-169 600.1 419 67.3
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 1.3e-169 600.1 419 68.5
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 1.7e-169 599.7 419 68.3
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 1.1e-168 597.0 419 67.8
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 4.6e-167 591.7 419 66.3
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 7.8e-167 590.9 419 67.8
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 1.3e-166 590.1 420 67.9
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 1.3e-166 590.1 419 68.0
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.3e-166 590.1 418 67.7
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 8.7e-166 587.4 418 67.5
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 1.1e-165 587.0 417 66.9
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 2.5e-165 585.9 419 66.1
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 3.6e-164 582.0 419 67.5
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 4.7e-164 581.6 415 66.5
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 6.2e-164 581.3 414 65.9
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 8.1e-164 580.9 409 67.2
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.8e-163 579.7 419 65.2
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 2.4e-163 579.3 419 66.8
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 7.6e-162 574.3 419 64.9
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 1.3e-161 573.5 420 66.9
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 4.9e-161 571.6 419 65.2
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.1e-160 570.5 419 67.5
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 1.4e-160 570.1 419 65.2
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 1.9e-160 569.7 422 66.4
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 3.2e-160 568.9 420 65.0
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 5.4e-160 568.2 424 65.1
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 9.3e-160 567.4 419 65.2
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.6e-159 566.6 419 65.2
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 1.3e-158 563.5 422 64.7
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.7e-158 563.1 420 66.4
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 2.3e-158 562.8 419 64.0
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 5.1e-158 561.6 419 63.7
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 5.1e-158 561.6 424 63.9
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 6.6e-158 561.2 424 63.9
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 1.1e-157 560.5 419 64.0
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 2.5e-157 559.3 419 63.2
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 2.4e-155 552.7 419 63.2
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 3.1e-155 552.4 419 63.5
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 6.9e-155 551.2 419 63.2
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 6.9e-155 551.2 419 63.2
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 2.2e-153 546.2 419 62.5
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 8.4e-153 544.3 423 63.4
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 2.3e-150 536.2 419 62.3
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 1.3e-148 530.4 421 63.9
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 5.3e-147 525.0 418 63.6
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 9.0e-147 524.2 420 63.3
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 9.9e-146 520.8 376 65.4
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 2.2e-145 519.6 419 58.7
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 8.4e-145 517.7 418 62.7
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 3.5e-143 512.3 419 57.8
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.3e-142 510.4 419 58.0
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 9.0e-139 497.7 424 58.7
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 5.7e-133 478.4 419 56.3
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 1.5e-130 470.3 357 66.1
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 1.3e-121 440.7 403 53.6
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 5.1e-118 428.7 424 52.4
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 1.1e-115 421.0 424 50.9
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 1.8e-110 403.7 249 76.7
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 2.0e-109 400.2 402 48.3
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 6.3e-108 395.2 282 66.3
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.0e-105 387.9 330 57.9
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 4.2e-104 382.5 421 47.7
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 7.5e-93 345.1 373 48.3
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 1.6e-90 337.4 302 57.9
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 2.3e-86 323.6 409 43.5
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 2.0e-82 310.5 252 57.9
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 1.9e-80 303.9 296 51.7
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.2e-68 263.8 266 54.1
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 1.4e-67 261.2 317 42.0
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 5.1e-57 226.1 134 78.4
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.9e-43 181.0 99 84.8
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 7.1e-43 179.1 155 58.1
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 2.7e-42 177.2 131 62.6
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 6.2e-39 166.0 91 84.6
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-30 138.7 74 83.8
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 2.4e-30 137.5 71 85.9
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 7.6e-29 132.5 71 84.5
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-27 128.6 71 83.1
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-27 128.6 71 83.1
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 1.3e-23 115.2 104 56.7
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 2.5e-19 100.9 102 49.0
SMO111G0157 Selaginella moellendorffii HOM05D019739 ORTHO05D026044 1.9e-16 91.3 411 25.1
FvH4_3g21190 Fragaria vesca HOM05D000051 ORTHO05D000015 3.3e-08 63.9 245 24.5
Migut.E00919 Erythranthe guttata HOM05D005930 ORTHO05D003423 5.7e-08 63.2 244 28.3
Dinv21722 Davidia involucrata HOM05D000051 ORTHO05D000015 7.4e-08 62.8 236 25.4
Migut.E01649 Erythranthe guttata HOM05D005930 ORTHO05D003423 3.7e-07 60.5 217 27.2
Migut.E00952 Erythranthe guttata HOM05D005930 ORTHO05D003423 4.8e-07 60.1 137 29.9
Hund23611 Selenicereus undatus HOM05D001396 ORTHO05D000493 6.3e-07 59.7 230 23.9
CBR_g46671 Chara braunii HOM05D014545 ORTHO05D020397 1.8e-06 58.2 269 24.2
FAN11G3894 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.8e-06 58.2 228 27.6
FAN25G3744 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.8e-06 58.2 237 28.7
Nitab4.5_0000027g0360 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.8e-06 58.2 150 28.7
RhsimUnG0013100 Rhododendron simsii HOM05D000051 ORTHO05D000015 3.1e-06 57.4 239 25.1


User provided reference genes

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