Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 0.0e+00 1299.3 658 100.0
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 0.0e+00 1092.8 681 84.6
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 1.3e-304 1049.3 692 80.1
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 3.5e-299 1031.2 681 80.0
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 2.4e-295 1018.5 682 79.5
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 5.7e-289 997.3 677 77.8
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 5.3e-287 990.7 677 77.3
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.2e-275 953.0 674 75.7
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.5e-270 936.0 733 70.1
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 1.1e-268 929.9 629 79.0
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 6.3e-264 914.1 618 78.6
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 2.8e-256 888.6 675 70.1
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 1.9e-252 875.9 675 67.1
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 9.4e-252 873.6 675 69.8
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 1.0e-250 870.2 678 67.8
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.1e-247 858.6 675 67.0
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 2.0e-246 855.9 674 68.4
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 2.0e-246 855.9 674 68.4
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.2e-244 848.6 698 64.8
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 1.2e-241 840.1 675 69.0
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 4.4e-241 838.2 675 66.1
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.7e-240 836.3 671 66.5
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 1.4e-239 833.2 674 67.8
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 5.2e-234 814.7 684 64.2
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 6.8e-234 814.3 698 64.5
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 5.7e-233 811.2 679 65.7
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 5.7e-233 811.2 632 67.4
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.3e-232 810.1 638 66.9
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 3.7e-232 808.5 674 65.9
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 8.3e-232 807.4 679 65.5
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 3.2e-231 805.4 670 66.7
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 7.8e-230 800.8 675 65.3
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 1.0e-229 800.4 676 64.2
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.4e-226 790.0 677 63.1
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 3.1e-226 788.9 675 65.2
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 4.0e-226 788.5 678 63.1
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 1.4e-223 780.0 657 65.1
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.9e-223 779.6 680 63.5
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 2.7e-222 775.8 628 67.8
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 3.9e-221 771.9 669 64.4
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 8.6e-221 770.8 677 63.4
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 5.6e-220 768.1 676 62.9
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 4.0e-218 761.9 675 62.5
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.0e-217 759.6 682 62.5
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 2.6e-217 759.2 678 64.0
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 7.5e-217 757.7 666 61.4
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 4.9e-216 755.0 686 61.1
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 6.6e-213 744.6 678 61.1
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 8.6e-213 744.2 789 55.6
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 3.3e-212 742.3 661 63.2
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.2e-211 740.3 644 62.3
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.8e-210 736.5 676 61.7
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.5e-209 733.4 677 60.6
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.0e-209 733.0 686 59.6
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 1.7e-208 729.9 681 61.5
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.9e-207 726.5 690 59.0
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 2.3e-205 719.5 682 59.8
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 4.3e-204 715.3 667 59.4
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.4e-202 710.3 675 58.5
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 9.9e-201 704.1 679 59.2
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 2.9e-200 702.6 565 68.0
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 2.4e-199 699.5 643 61.1
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.7e-197 693.3 658 59.6
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 8.7e-197 691.0 650 59.2
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.1e-196 690.6 744 54.6
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 2.4e-194 682.9 572 65.4
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 4.0e-194 682.2 653 59.0
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 9.0e-194 681.0 618 60.7
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 2.4e-191 672.9 681 58.3
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 2.1e-190 669.8 686 58.0
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 3.9e-189 665.6 687 56.3
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 1.1e-188 664.1 662 56.0
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 1.5e-188 663.7 676 57.7
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 4.8e-187 658.7 688 55.5
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.4e-185 652.5 611 60.6
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 2.9e-184 649.4 675 56.6
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 4.9e-184 648.7 675 56.1
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 9.3e-183 644.4 677 57.0
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.6e-182 643.7 587 61.2
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 7.9e-182 641.3 678 55.9
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 3.9e-181 639.0 679 55.5
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 3.9e-181 639.0 679 55.5
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 1.9e-180 636.7 445 71.5
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 2.5e-180 636.3 672 55.7
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 4.3e-180 635.6 666 55.4
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 1.6e-179 633.6 666 55.3
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 1.6e-179 633.6 666 55.3
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 5.8e-177 625.2 659 57.1
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 1.0e-176 624.4 676 54.3
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 1.0e-176 624.4 676 54.3
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 1.0e-176 624.4 694 54.2
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.0e-173 614.4 545 62.8
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 4.3e-172 609.0 703 52.5
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 3.7e-171 605.9 430 72.6
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.2e-166 590.9 634 55.7
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 6.9e-162 575.1 710 48.7
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 2.9e-160 569.7 598 53.2
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 4.2e-159 565.8 678 50.0
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 6.7e-157 558.5 456 66.7
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 1.3e-155 554.3 685 49.1
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 8.2e-155 551.6 445 65.2
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 1.8e-154 550.4 657 51.4
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 2.1e-150 537.0 613 52.2
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 4.7e-142 509.2 666 49.4
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 5.7e-140 502.3 674 46.7
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 4.5e-137 492.7 667 48.1
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.5e-136 488.8 408 67.9
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 7.2e-127 458.8 668 44.8
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 3.6e-110 403.3 452 53.8
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 3.1e-109 400.2 617 42.5
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 2.2e-107 394.0 445 50.3
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 3.5e-105 386.7 677 41.1
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 3.7e-99 366.7 606 40.4
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.4e-90 338.2 556 41.7
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 1.6e-78 298.1 313 60.1
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 1.5e-76 291.6 466 42.1
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 9.3e-74 282.3 283 61.5
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.3e-72 277.7 458 41.0
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.6e-70 270.4 200 65.0
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.3e-64 251.9 346 40.5
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-60 238.4 323 44.3
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.6e-57 228.4 298 41.6
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 4.8e-54 216.9 167 64.1
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 8.5e-51 206.1 263 52.5
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 8.5e-51 206.1 303 50.2
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 3.0e-48 197.6 208 49.0
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.5e-44 185.3 281 47.7
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.9e-43 181.0 115 85.2
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 2.6e-39 167.9 240 45.4
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 1.8e-37 161.8 91 96.7
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 7.7e-36 156.4 168 53.6
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.9e-35 154.5 277 35.7
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 1.2e-33 149.1 83 81.9
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 9.1e-29 132.9 100 70.0
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.0e-24 119.4 191 47.6
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.4e-21 109.0 120 43.3
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 2.4e-21 108.2 91 53.8
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 2.4e-21 108.2 91 53.8
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 5.3e-21 107.1 68 73.5
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 2.2e-19 101.7 59 79.7
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.2e-19 101.7 113 53.1
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 1.6e-17 95.5 74 62.2
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 2.3e-16 91.7 176 32.4
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 4.0e-16 90.9 130 49.2
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 5.7e-15 87.0 51 82.4
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.8e-13 82.0 63 76.2
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 3.5e-12 77.8 53 69.8
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 6.5e-11 73.6 53 62.3
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 1.9e-10 72.0 118 40.7
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 9.5e-10 69.7 68 52.9
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 9.5e-10 69.7 68 52.9
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 1.4e-08 65.9 150 28.0
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 1.5e-07 62.4 129 31.0
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 4.4e-07 60.8 49 67.3
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.3e-06 59.3 32 90.6


User provided reference genes

Program Settings