Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 5.8e-178 627.5 325 100.0
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 1.4e-147 526.6 326 86.2
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 1.5e-141 506.5 326 83.4
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 9.1e-139 497.3 329 81.2
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 1.9e-128 463.0 328 76.2
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 2.7e-127 459.1 328 75.3
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 4.4e-125 451.8 329 73.9
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 9.7e-125 450.7 331 74.6
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 2.4e-123 446.0 331 75.8
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 2.3e-118 429.5 337 71.5
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 7.5e-117 424.5 338 70.7
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 6.8e-110 401.4 352 67.3
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 7.0e-107 391.3 365 65.2
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 1.7e-105 386.7 363 64.7
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 8.6e-105 384.4 350 65.4
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 1.4e-86 323.9 335 57.0
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 5.8e-85 318.5 347 53.9
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 2.2e-84 316.6 331 57.7
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 2.9e-84 316.2 334 56.6
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.3e-81 306.6 352 54.0
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 8.6e-81 304.7 326 55.8
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 8.6e-81 304.7 328 54.6
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 1.1e-80 304.3 329 53.2
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 2.5e-80 303.1 328 55.2
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.5e-80 303.1 353 53.3
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 9.5e-80 301.2 356 53.4
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.2e-79 300.8 356 53.1
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.6e-79 300.4 360 52.2
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 1.1e-78 297.7 331 56.5
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 3.1e-78 296.2 350 52.9
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 2.9e-76 289.7 331 52.3
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 1.9e-75 287.0 326 51.5
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 4.1e-75 285.8 329 53.2
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 5.4e-75 285.4 322 51.2
Lj1g0019516 Lotus japonicus HOM05D004919 ORTHO05D005994 7.8e-74 281.6 212 71.2
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 5.1e-73 278.9 324 52.5
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 1.5e-72 277.3 333 50.8
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 2.1e-71 273.5 330 50.0
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 3.6e-71 272.7 332 48.8
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 3.1e-70 269.6 329 49.2
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 3.1e-70 269.6 329 48.9
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 5.2e-70 268.9 331 47.7
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 2.6e-69 266.5 328 50.0
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 2.6e-69 266.5 336 48.2
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 5.8e-69 265.4 323 49.8
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 7.6e-69 265.0 335 48.7
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 6.4e-68 261.9 332 49.4
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 6.4e-68 261.9 320 48.4
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 8.4e-68 261.5 318 50.0
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 1.1e-67 261.2 338 48.2
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 2.4e-67 260.0 316 48.4
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 3.2e-67 259.6 342 46.5
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 3.2e-67 259.6 332 46.7
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 4.2e-67 259.2 346 49.4
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 5.4e-67 258.8 340 46.2
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 7.1e-67 258.5 335 48.1
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 7.1e-67 258.5 332 46.4
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 7.1e-67 258.5 332 46.4
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 1.6e-66 257.3 331 47.1
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 2.1e-66 256.9 334 50.9
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 4.6e-66 255.8 322 48.1
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 6.0e-66 255.4 319 47.3
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 3.9e-65 252.7 332 49.4
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 6.6e-65 251.9 267 56.2
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 8.7e-65 251.5 336 47.6
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 1.9e-64 250.4 329 47.1
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 8.1e-63 245.0 322 45.7
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 8.1e-63 245.0 317 46.4
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 1.1e-62 244.6 326 48.2
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.8e-62 243.8 318 46.5
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 4.0e-62 242.7 362 45.3
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 1.2e-61 241.1 329 50.2
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 1.5e-61 240.7 254 54.3
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 2.6e-61 240.0 326 45.7
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 3.4e-61 239.6 278 51.8
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 3.4e-61 239.6 260 52.7
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 4.5e-61 239.2 328 49.1
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 9.9e-61 238.0 333 47.1
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 1.3e-60 237.7 332 48.2
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 2.2e-60 236.9 311 47.9
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 2.2e-60 236.9 340 43.8
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 8.4e-60 235.0 326 46.6
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 2.7e-58 229.9 323 48.0
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 2.1e-55 220.3 333 40.8
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 1.1e-54 218.0 307 42.3
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 1.1e-54 218.0 330 46.1
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 7.6e-53 211.8 326 44.8
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 4.9e-52 209.1 323 41.5
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 1.1e-51 208.0 250 50.4
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 9.0e-46 188.3 208 53.4
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.2e-45 188.0 248 47.2
ECA233G1753 Erigeron canadensis HOM05D004919 ORTHO05D005994 3.4e-45 186.4 277 47.7
Lsat_1_v5_gn_8_31480 Lactuca sativa HOM05D004919 ORTHO05D005994 1.0e-44 184.9 258 47.7
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 3.8e-44 183.0 327 40.7
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 7.1e-43 178.7 281 42.7
HPP92_008286 Vanilla planifolia HOM05D004919 ORTHO05D005994 1.2e-42 177.9 250 44.0
MBI03_g34782_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 3.5e-42 176.4 305 39.7
HanXRQChr13g0387291 Helianthus annuus HOM05D004919 ORTHO05D005994 4.6e-42 176.0 270 44.8
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 1.9e-40 170.6 249 40.6
HanXRQChr12g0367661 Helianthus annuus HOM05D004919 ORTHO05D005994 5.7e-40 169.1 268 44.8
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 4.8e-39 166.0 214 47.2
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 4.1e-38 162.9 262 43.1
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 1.0e-36 158.3 333 36.9
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 1.1e-35 154.8 329 36.8
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 1.9e-35 154.1 331 36.3
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 5.5e-35 152.5 329 36.2
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.6e-34 151.0 169 49.1
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 2.7e-34 150.2 318 33.6
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 2.7e-34 150.2 332 35.8
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 4.6e-34 149.4 298 35.6
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 7.9e-34 148.7 332 35.2
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 1.0e-33 148.3 323 35.9
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 1.0e-33 148.3 323 35.9
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 1.0e-33 148.3 334 33.5
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 1.8e-33 147.5 323 35.9
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 1.8e-33 147.5 297 33.7
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 2.3e-33 147.1 319 36.1
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 5.1e-33 146.0 325 34.5
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 6.7e-33 145.6 298 32.9
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 1.3e-31 141.4 286 33.2
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 1.4e-30 137.9 302 34.4
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 1.8e-30 137.5 261 39.5
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 9.1e-30 135.2 298 31.5
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 2.6e-29 133.7 293 33.4
CDE02G0066 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.0e-28 131.7 276 37.0
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 6.5e-28 129.0 301 32.6
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 8.5e-28 128.6 301 32.6
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 1.9e-27 127.5 297 31.3
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 2.5e-27 127.1 301 32.2
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 9.4e-27 125.2 297 31.0
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 1.5e-21 107.8 202 36.1
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 1.7e-20 104.4 293 29.0
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 2.9e-20 103.6 286 29.0
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 5.2e-17 92.8 192 35.4
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 5.2e-17 92.8 192 35.4
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 3.3e-16 90.1 181 32.6
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 5.7e-16 89.4 190 33.7
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 5.7e-16 89.4 187 35.8
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 6.3e-15 85.9 125 42.4
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 1.1e-14 85.1 181 32.6
PGSC0003DMG400021951 Solanum tuberosum HOM05D004919 ORTHO05D005994 5.9e-13 79.3 274 28.1
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 1.5e-11 74.7 157 34.4
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 1.5e-11 74.7 158 34.2
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 5.5e-11 72.8 157 33.8
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 2.6e-08 63.9 125 34.4
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 2.6e-08 63.9 125 34.4
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 1.7e-07 61.2 207 29.5
Lalb_Chr15g0085711 Lupinus albus HOM05D000592 ORTHO05D000900 1.4e-06 58.2 39 61.5
Manes.18G139900 Manihot esculenta HOM05D000592 ORTHO05D000900 3.1e-06 57.0 91 37.4
Ca_15066_v3 Cicer arietinum L. HOM05D000592 ORTHO05D000900 5.3e-06 56.2 39 59.0
Lj6g0013783 Lotus japonicus HOM05D000592 ORTHO05D000900 5.3e-06 56.2 64 42.2
Gohir.A03G151700 Gossypium hirsutum HOM05D000592 ORTHO05D000900 9.1e-06 55.5 92 38.0
Hma1.2p1_0602F.1_g187540 Hydrangea macrophylla HOM05D000592 ORTHO05D001485 9.1e-06 55.5 260 22.7
Lalb_Chr18g0054151 Lupinus albus HOM05D000592 ORTHO05D000900 9.1e-06 55.5 72 37.5


User provided reference genes

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