Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 2191.4 1093 100.0
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 2090.1 1093 94.9
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 2067.7 1091 94.3
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 2032.3 1093 91.8
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1972.6 1091 89.5
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1971.4 1091 89.4
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1965.7 1091 89.4
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1949.5 1091 88.2
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1941.0 1087 88.9
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1937.5 1089 87.9
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1855.9 1084 84.3
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1855.9 1084 84.3
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1743.8 1082 78.5
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1740.7 1083 78.4
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1739.5 1082 78.2
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1729.9 1081 78.7
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1727.2 1084 77.5
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1721.4 1082 77.5
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1718.4 1083 77.7
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1718.0 1083 77.7
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1714.1 1081 77.2
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1713.4 1092 76.5
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1711.4 1084 77.3
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1709.1 1087 77.6
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1709.1 1091 76.4
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1708.0 1087 76.1
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1705.6 1084 76.2
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1704.5 1085 77.1
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1696.8 1083 76.5
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1692.9 1085 76.5
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1687.2 1083 75.7
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1681.8 1091 75.4
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1680.2 1071 76.4
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1678.3 1091 75.2
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1677.9 1091 75.2
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1676.0 1164 71.9
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1674.8 1084 75.6
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1674.8 1084 75.6
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1673.7 1085 74.6
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1673.7 1091 75.3
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1671.4 1084 76.6
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1669.8 1083 76.4
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1667.9 1164 71.8
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1667.5 1083 76.3
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1666.0 1083 75.3
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1664.0 1100 75.3
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1652.1 1111 72.4
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1651.0 1085 74.9
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1649.8 1091 74.3
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1645.9 1092 73.5
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1642.9 1089 73.0
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1642.5 1085 74.6
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1639.8 1082 73.4
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1635.9 1084 74.4
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1606.7 1081 72.9
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1606.7 1091 73.2
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1600.5 1086 71.7
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1596.6 1083 71.7
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1596.6 1084 71.8
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1596.3 1089 72.7
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1593.9 1085 72.1
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1588.5 1083 71.2
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1588.2 1083 71.5
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1587.4 1081 72.0
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1587.4 1083 71.2
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1585.9 1083 71.6
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1585.9 1083 71.3
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1585.9 1096 71.1
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1584.3 1092 71.2
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1583.2 1081 71.7
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1582.8 1086 71.9
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1582.4 1090 71.3
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1579.3 1083 71.5
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1579.3 1088 69.9
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1578.9 1083 71.0
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1578.1 1015 76.2
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1577.8 1110 70.1
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1577.4 1086 71.7
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1576.2 1085 70.8
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1575.1 1097 69.6
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1574.7 1083 71.6
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1574.7 1068 71.5
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1573.9 1084 72.9
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1571.6 1083 71.2
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1571.6 1083 71.2
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1571.2 1083 71.2
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1570.8 1083 71.2
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1569.7 1083 71.1
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1568.5 1086 70.6
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1567.4 1083 71.1
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1562.7 1084 70.0
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1561.6 1090 70.6
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1559.7 1111 69.0
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1552.3 995 77.3
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1551.2 1084 70.5
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1548.5 1103 70.2
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1547.7 1104 68.8
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1544.6 1084 69.6
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1540.8 1082 68.9
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1540.4 1161 65.8
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1537.3 1086 69.9
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1524.2 1002 74.8
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1523.8 1082 68.5
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1520.0 1058 70.5
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1482.6 1114 65.8
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1464.9 1084 69.2
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1464.5 980 72.6
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1458.0 1085 65.9
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1434.5 1083 66.2
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1425.2 1107 63.7
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1356.7 1084 64.9
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1292.7 790 80.6
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1185.2 1089 55.2
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1180.6 1093 54.5
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1176.4 689 82.6
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1164.8 1131 53.1
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1151.3 717 78.1
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1147.9 1088 53.7
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1143.6 671 81.2
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1122.5 1090 52.3
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1092.0 757 71.6
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 2.5e-289 999.2 845 59.2
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 7.2e-281 971.1 817 61.0
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 5.9e-275 951.4 613 77.0
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 4.6e-251 872.1 968 48.9
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 5.6e-249 865.1 626 68.8
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 8.9e-239 831.2 499 78.8
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 3.4e-230 802.7 634 63.7
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.1e-215 754.6 979 45.4
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 5.3e-175 619.4 616 53.7
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.6e-166 590.5 430 68.8
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 6.1e-155 552.7 303 85.1
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.1e-131 474.6 310 73.5
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 1.8e-130 471.5 388 63.7
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 4.5e-81 307.4 297 55.2
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 9.7e-76 289.7 240 60.8
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 4.8e-67 260.8 136 88.2
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.6e-62 245.7 205 60.5
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 9.7e-52 209.9 138 68.1
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 3.7e-35 154.8 162 53.7
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 3.1e-34 151.8 140 58.6
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 4.2e-31 141.4 156 48.1
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 2.1e-30 139.0 145 55.2
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 6.8e-29 134.0 72 84.7
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 5.7e-28 131.0 106 62.3
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 7.0e-26 124.0 97 63.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 4.3e-23 114.8 88 65.9
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.3e-16 93.2 47 95.7
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 1.1e-13 83.6 73 50.7
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 4.0e-13 81.6 49 71.4
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 9.2e-10 70.5 114 41.2
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 2.5e-07 62.4 39 71.8


User provided reference genes

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