Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 3.0e-41 171.8 112 100.0
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 5.0e-20 101.3 112 56.2
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 8.8e-17 90.5 116 51.7
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.2e-16 90.1 113 54.9
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.5e-16 89.7 113 61.1
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.6e-16 89.0 113 52.2
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 9.7e-16 87.0 113 48.7
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.7e-15 86.3 112 49.1
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 1.7e-15 86.3 112 50.0
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 6.3e-15 84.3 112 59.8
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.3e-15 84.3 112 59.8
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.3e-15 84.3 112 60.7
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.1e-14 83.6 115 47.8
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 1.1e-14 83.6 112 47.3
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.4e-14 82.4 110 60.0
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 5.3e-14 81.3 112 49.1
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 5.3e-14 81.3 115 64.3
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 9.1e-14 80.5 112 46.4
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 4.5e-13 78.2 113 42.5
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 4.5e-13 78.2 111 44.1
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 5.9e-13 77.8 113 46.0
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 5.9e-13 77.8 114 46.5
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 5.9e-13 77.8 113 61.1
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.0e-12 77.0 113 45.1
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 1.0e-12 77.0 113 44.2
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.3e-12 76.6 117 57.3
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.3e-12 76.6 117 57.3
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.3e-12 76.6 112 59.8
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 1.7e-12 76.3 114 43.0
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.7e-12 76.3 112 46.4
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 1.7e-12 76.3 124 44.4
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 2.2e-12 75.9 113 45.1
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 2.2e-12 75.9 113 45.1
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.2e-12 75.9 117 44.4
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 2.2e-12 75.9 110 48.2
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 2.9e-12 75.5 111 45.0
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 2.9e-12 75.5 115 44.3
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 3.8e-12 75.1 114 43.9
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 5.0e-12 74.7 120 43.3
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 5.0e-12 74.7 115 59.1
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 5.0e-12 74.7 115 54.8
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 8.5e-12 73.9 112 49.1
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 8.5e-12 73.9 112 49.1
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 8.5e-12 73.9 112 49.1
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 8.5e-12 73.9 114 45.6
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 8.5e-12 73.9 114 62.3
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 1.1e-11 73.6 112 44.6
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 1.1e-11 73.6 111 44.1
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 1.1e-11 73.6 109 59.6
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.1e-11 73.6 114 43.9
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.5e-11 73.2 112 47.3
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.5e-11 73.2 112 48.2
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.5e-11 73.2 114 47.4
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 1.5e-11 73.2 115 60.0
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.5e-11 73.2 119 43.7
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 2.5e-11 72.4 118 49.2
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 3.2e-11 72.0 112 47.3
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 3.2e-11 72.0 117 48.7
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 4.2e-11 71.6 113 45.1
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 4.2e-11 71.6 112 44.6
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 4.2e-11 71.6 112 44.6
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 4.2e-11 71.6 118 44.9
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 4.2e-11 71.6 114 40.4
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 4.2e-11 71.6 109 61.5
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 5.5e-11 71.2 115 46.1
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 9.4e-11 70.5 112 46.4
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.2e-10 70.1 113 45.1
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.6e-10 69.7 112 43.8
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 1.6e-10 69.7 114 58.8
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.6e-10 69.7 113 44.2
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 1.6e-10 69.7 117 44.4
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 2.1e-10 69.3 113 40.7
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 2.1e-10 69.3 113 43.4
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 2.1e-10 69.3 116 44.0
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.7e-10 68.9 104 44.2
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 3.6e-10 68.6 112 45.5
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 3.6e-10 68.6 118 41.5
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 3.6e-10 68.6 112 44.6
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 3.6e-10 68.6 115 46.1
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 3.6e-10 68.6 116 42.2
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 3.6e-10 68.6 112 44.6
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 4.7e-10 68.2 112 44.6
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 4.7e-10 68.2 113 43.4
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 4.7e-10 68.2 112 44.6
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 6.1e-10 67.8 112 46.4
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 6.1e-10 67.8 113 44.2
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 6.1e-10 67.8 112 45.5
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 6.1e-10 67.8 113 46.0
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 8.0e-10 67.4 117 53.8
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.0e-09 67.0 38 78.9
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 1.0e-09 67.0 112 42.9
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 1.4e-09 66.6 118 41.5
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 1.4e-09 66.6 118 41.5
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.4e-09 66.6 113 43.4
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.8e-09 66.2 116 42.2
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 2.3e-09 65.9 114 43.9
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 2.3e-09 65.9 112 57.1
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 2.3e-09 65.9 114 43.9
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 2.3e-09 65.9 114 43.9
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 2.3e-09 65.9 113 45.1
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 3.0e-09 65.5 41 73.2
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 3.0e-09 65.5 114 41.2
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 4.0e-09 65.1 112 48.2
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 4.0e-09 65.1 112 48.2
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 4.0e-09 65.1 112 40.2
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 5.2e-09 64.7 110 60.0
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 5.2e-09 64.7 112 42.0
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 5.2e-09 64.7 116 41.4
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 6.8e-09 64.3 112 42.0
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 6.8e-09 64.3 112 42.9
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 8.8e-09 63.9 111 43.2
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 1.2e-08 63.5 114 43.0
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.2e-08 63.5 116 37.9
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 1.2e-08 63.5 111 41.4
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 1.5e-08 63.2 110 59.1
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.5e-08 63.2 111 42.3
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 2.0e-08 62.8 115 43.5
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.0e-08 62.8 115 42.6
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.0e-08 62.8 115 42.6
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 2.0e-08 62.8 39 74.4
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 2.6e-08 62.4 39 74.4
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 2.6e-08 62.4 114 43.9
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 5.7e-08 61.2 113 42.5
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 7.5e-08 60.8 110 58.2
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 7.5e-08 60.8 39 69.2
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 7.5e-08 60.8 113 42.5
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 7.5e-08 60.8 115 40.9
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 7.5e-08 60.8 115 36.5
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 9.8e-08 60.5 113 42.5
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.7e-07 59.7 111 42.3
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.7e-07 59.7 111 42.3
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 2.2e-07 59.3 38 71.1
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 2.2e-07 59.3 28 89.3
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 3.7e-07 58.5 98 45.9
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 4.8e-07 58.2 40 72.5
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 4.8e-07 58.2 107 40.2
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 8.3e-07 57.4 110 57.3
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.1e-06 57.0 112 39.3
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 1.1e-06 57.0 110 57.3
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 1.1e-06 57.0 113 40.7
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.1e-06 57.0 38 76.3
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 1.4e-06 56.6 117 56.4
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.4e-06 55.8 116 39.7
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 2.4e-06 55.8 102 45.1
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 3.1e-06 55.5 112 37.5
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 3.1e-06 55.5 116 53.4
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 3.1e-06 55.5 119 34.5
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 3.1e-06 55.5 119 33.6
Actinidia06914 Actinidia chinensis HOM05D004268 ORTHO05D004958 4.1e-06 55.1 98 60.2
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 4.1e-06 55.1 34 76.5
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 4.1e-06 55.1 93 37.6
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 5.4e-06 54.7 112 36.6
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 5.4e-06 54.7 37 73.0
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 7.0e-06 54.3 38 65.8


User provided reference genes

Program Settings