Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 3.1e-187 658.3 329 100.0
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 6.3e-156 554.3 329 81.8
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 2.3e-150 535.8 329 81.2
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 5.2e-150 534.6 326 80.4
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.0e-149 532.7 322 79.8
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 2.5e-144 515.8 326 75.8
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 7.3e-144 514.2 331 78.2
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.0e-141 506.1 326 75.5
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 7.5e-141 504.2 326 75.2
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 9.8e-141 503.8 326 75.8
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 1.7e-140 503.1 326 76.4
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 2.2e-140 502.7 323 76.2
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 2.4e-139 499.2 326 74.2
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.4e-139 499.2 324 75.9
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.1e-139 498.4 324 75.6
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 5.4e-139 498.0 326 74.8
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.6e-138 496.5 326 74.8
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 3.5e-138 495.4 326 73.6
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 5.9e-138 494.6 326 75.8
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 7.8e-138 494.2 322 75.5
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.0e-137 493.8 321 75.7
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 1.7e-137 493.0 326 73.9
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 2.3e-137 492.7 323 74.9
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 3.0e-137 492.3 328 73.8
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 5.0e-137 491.5 324 75.0
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 2.5e-136 489.2 325 72.6
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.5e-136 489.2 328 72.6
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 2.5e-136 489.2 328 72.9
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 5.6e-136 488.0 323 74.3
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 9.5e-136 487.3 328 73.2
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 1.6e-135 486.5 328 75.0
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.2e-135 484.6 329 72.6
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 6.2e-135 484.6 324 74.7
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 8.0e-135 484.2 326 74.8
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 1.8e-134 483.0 327 73.4
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 2.3e-134 482.6 328 72.9
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 6.8e-134 481.1 326 72.4
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 6.8e-134 481.1 324 73.1
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 1.2e-133 480.3 334 73.4
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.5e-133 479.9 324 73.5
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 2.0e-133 479.6 331 72.5
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 2.6e-133 479.2 324 72.8
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 3.4e-133 478.8 327 71.3
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.4e-133 478.4 323 71.8
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 7.5e-133 477.6 327 72.8
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.7e-132 475.3 323 71.5
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 4.9e-132 474.9 324 71.6
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 8.3e-132 474.2 324 72.8
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.1e-131 473.8 323 70.9
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 1.9e-131 473.0 328 72.6
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 3.2e-131 472.2 329 71.7
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.2e-131 472.2 329 71.7
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.2e-131 472.2 329 71.4
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 5.4e-131 471.5 324 71.0
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 5.4e-131 471.5 325 70.8
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 1.2e-130 470.3 321 72.6
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 1.6e-130 469.9 325 70.8
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 1.6e-130 469.9 322 71.1
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 2.0e-130 469.5 323 70.3
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 2.0e-130 469.5 320 71.2
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 2.7e-130 469.2 328 71.0
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 6.0e-130 468.0 320 71.9
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.0e-129 467.2 326 70.2
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 3.9e-129 465.3 326 70.2
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 6.6e-129 464.5 326 69.9
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 6.6e-129 464.5 326 70.6
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 3.3e-128 462.2 371 65.2
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 4.3e-128 461.8 322 69.9
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 7.3e-128 461.1 323 71.2
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 2.8e-127 459.1 325 68.6
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 2.8e-127 459.1 318 72.3
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 8.1e-127 457.6 419 60.4
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 6.8e-126 454.5 322 69.6
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.0e-125 453.0 323 69.7
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 2.2e-124 449.5 326 67.8
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 2.9e-124 449.1 326 68.1
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 3.7e-124 448.7 309 69.9
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 8.3e-124 447.6 323 68.1
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 1.1e-123 447.2 324 68.8
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 2.4e-123 446.0 321 68.2
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.1e-123 445.3 323 68.1
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.2e-122 443.7 326 68.1
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.7e-121 439.9 325 65.5
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 8.6e-121 437.6 325 65.5
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.1e-120 437.2 325 66.2
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 1.5e-120 436.8 325 64.9
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 2.5e-120 436.0 325 66.2
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 2.5e-120 436.0 325 65.5
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 4.3e-120 435.3 307 69.7
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 9.5e-120 434.1 323 65.3
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 1.6e-119 433.3 328 67.1
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 1.6e-119 433.3 325 64.6
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 3.6e-119 432.2 325 64.6
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 3.6e-119 432.2 325 63.4
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 1.4e-118 430.3 323 65.0
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 6.8e-118 427.9 325 66.2
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.5e-117 426.8 278 75.9
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 4.9e-116 421.8 322 66.1
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 1.9e-115 419.9 257 80.9
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 3.2e-115 419.1 324 63.3
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 3.2e-115 419.1 325 64.9
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.2e-114 417.2 324 63.3
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 1.6e-114 416.8 323 64.4
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 2.1e-114 416.4 294 69.7
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 2.7e-114 416.0 266 78.6
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 6.0e-114 414.8 324 63.0
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 5.1e-113 411.8 325 62.8
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 5.6e-112 408.3 544 44.7
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.1e-110 402.5 305 63.6
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.1e-107 394.0 380 57.4
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 2.7e-106 389.4 323 59.4
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.7e-105 386.7 290 65.9
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 4.3e-104 382.1 323 59.1
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.2e-100 369.8 324 60.5
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.2e-100 369.8 323 59.8
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.4e-99 367.1 289 64.7
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 3.2e-99 365.9 685 36.9
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.1e-98 363.2 324 59.0
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.9e-92 342.8 326 55.2
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 2.9e-92 342.8 272 64.7
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 2.7e-90 336.3 265 62.3
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 1.3e-89 334.0 222 73.9
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.4e-86 323.9 315 52.1
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 9.0e-86 321.2 230 69.6
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.0e-84 317.8 258 63.6
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 4.9e-84 315.5 314 50.0
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.9e-83 313.5 176 85.8
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 3.2e-83 312.8 310 51.6
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 3.5e-82 309.3 202 77.2
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 6.7e-73 278.5 308 46.8
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 3.4e-69 266.2 217 60.8
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 3.5e-53 213.0 303 38.0
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 4.5e-45 186.0 191 47.1
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 4.5e-37 159.5 96 81.2
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 1.5e-32 144.4 99 66.7
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 5.7e-32 142.5 75 86.7
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 3.5e-29 133.3 99 64.6
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.3e-28 131.3 95 67.4
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.3e-28 130.6 95 67.4
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 5.0e-28 129.4 119 58.0
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.6e-26 124.4 86 73.3
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 1.3e-23 114.8 330 27.3
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 1.7e-20 104.4 88 60.2
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.3e-19 100.1 83 59.0
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 1.6e-13 81.3 98 50.0
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 2.3e-09 67.4 54 63.0
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 2.3e-09 67.4 54 63.0
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 3.1e-09 67.0 54 63.0
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.0e-08 64.3 56 55.4
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.7e-07 60.1 43 62.8
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 1.1e-06 58.5 50 56.0
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 1.4e-06 58.2 86 41.9


User provided reference genes

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