Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.2e-73 278.5 158 100.0
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.5e-67 259.6 168 91.7
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 5.0e-50 201.4 164 78.0
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.5e-41 172.6 144 79.2
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 2.0e-38 162.9 154 70.8
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 4.9e-37 158.3 163 67.5
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 3.5e-35 152.1 148 70.9
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 1.3e-34 150.2 144 71.5
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.3e-34 150.2 146 70.5
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.1e-33 147.1 145 71.0
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 9.5e-33 144.1 148 68.2
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 9.5e-33 144.1 152 66.4
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 1.2e-32 143.7 152 66.4
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.6e-32 143.3 152 66.4
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.8e-31 139.8 152 64.5
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 1.2e-30 137.1 152 61.8
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.4e-28 129.4 165 61.2
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 5.4e-28 128.3 152 61.8
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 7.0e-28 127.9 149 62.4
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 9.2e-28 127.5 96 87.5
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.0e-27 126.3 165 60.6
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 2.0e-27 126.3 117 73.5
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 2.7e-27 125.9 96 87.5
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.0e-26 124.0 146 63.0
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 3.0e-26 122.5 139 66.9
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 5.0e-26 121.7 178 55.6
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 8.6e-26 120.9 106 79.2
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.1e-25 120.6 137 65.0
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.9e-25 119.8 122 69.7
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.3e-25 119.0 137 64.2
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 9.5e-25 117.5 126 71.4
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 9.5e-25 117.5 136 66.9
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 1.2e-24 117.1 98 81.6
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 2.8e-24 115.9 142 62.0
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 6.2e-24 114.8 165 58.2
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 6.2e-24 114.8 180 53.3
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 8.0e-24 114.4 135 64.4
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 2.3e-23 112.8 111 70.3
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 2.3e-23 112.8 94 81.9
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 2.3e-23 112.8 94 81.9
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 3.1e-23 112.5 121 71.1
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 5.2e-23 111.7 91 84.6
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 6.8e-23 111.3 96 83.3
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 8.9e-23 110.9 122 68.0
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.2e-22 110.5 135 63.7
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.2e-22 110.5 135 63.7
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.2e-22 110.5 135 63.7
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 1.2e-22 110.5 91 84.6
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 2.0e-22 109.8 145 57.9
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 2.6e-22 109.4 152 54.6
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 3.4e-22 109.0 147 57.1
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 4.4e-22 108.6 163 55.2
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 4.4e-22 108.6 146 61.0
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 5.8e-22 108.2 151 53.6
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.7e-21 106.7 150 54.0
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 2.2e-21 106.3 92 70.7
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 2.9e-21 105.9 154 59.7
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 2.9e-21 105.9 93 79.6
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 3.7e-21 105.5 133 64.7
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 4.9e-21 105.1 88 80.7
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 4.9e-21 105.1 158 56.3
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.4e-20 103.6 113 69.0
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.4e-20 103.6 95 76.8
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 1.9e-20 103.2 158 56.3
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 2.4e-20 102.8 98 78.6
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 3.2e-20 102.4 126 58.7
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 5.4e-20 101.7 125 59.2
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 7.0e-20 101.3 150 52.7
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 9.2e-20 100.9 96 77.1
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.2e-19 100.5 115 67.0
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 2.0e-19 99.8 115 67.0
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.5e-19 99.0 162 50.0
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 3.5e-19 99.0 129 54.3
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 4.6e-19 98.6 142 57.7
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 7.8e-19 97.8 105 71.4
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 1.0e-18 97.4 105 71.4
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.0e-18 97.4 140 58.6
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 1.3e-18 97.1 96 77.1
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 3.0e-18 95.9 119 65.5
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 3.0e-18 95.9 144 50.7
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 3.9e-18 95.5 105 70.5
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 3.9e-18 95.5 105 70.5
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 3.9e-18 95.5 96 74.0
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 3.9e-18 95.5 96 76.0
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 5.0e-18 95.1 103 70.9
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 1.5e-17 93.6 115 58.3
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.5e-17 92.8 134 51.5
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 4.3e-17 92.0 91 75.8
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 4.3e-17 92.0 104 70.2
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 4.3e-17 92.0 117 59.8
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 7.3e-17 91.3 131 62.6
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 9.5e-17 90.9 95 65.3
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 9.5e-17 90.9 95 65.3
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 9.5e-17 90.9 95 65.3
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 1.2e-16 90.5 117 56.4
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.6e-16 90.1 121 52.9
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 2.8e-16 89.4 97 76.3
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 3.6e-16 89.0 129 61.2
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 3.6e-16 89.0 129 61.2
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 4.7e-16 88.6 105 68.6
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.1e-15 87.4 167 49.7
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 2.3e-15 86.3 117 57.3
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 2.3e-15 86.3 51 82.4
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 6.8e-15 84.7 95 63.2
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 4.4e-14 82.0 162 51.9
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 5.8e-14 81.6 142 51.4
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 9.8e-14 80.9 94 59.6
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 9.8e-14 80.9 103 62.1
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.3e-13 80.5 122 57.4
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.3e-13 80.5 92 67.4
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 1.7e-13 80.1 92 60.9
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 1.7e-13 80.1 92 60.9
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 1.7e-13 80.1 92 60.9
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 2.2e-13 79.7 110 64.5
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 2.9e-13 79.3 91 60.4
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 2.9e-13 79.3 91 60.4
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 3.7e-13 79.0 92 60.9
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 8.3e-13 77.8 81 65.4
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.1e-12 77.4 92 65.2
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 1.1e-12 77.4 98 62.2
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 1.4e-12 77.0 92 58.7
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.4e-12 77.0 146 47.3
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 2.4e-12 76.3 98 58.2
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 4.1e-12 75.5 81 64.2
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 4.1e-12 75.5 81 64.2
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 7.1e-12 74.7 81 67.9
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 9.2e-12 74.3 113 54.9
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 9.2e-12 74.3 134 52.2
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 9.2e-12 74.3 141 48.2
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.2e-11 73.9 92 62.0
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 1.6e-11 73.6 92 58.7
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 2.7e-11 72.8 93 59.1
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 2.7e-11 72.8 118 51.7
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 3.5e-11 72.4 92 64.1
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.5e-11 72.4 68 72.1
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 7.8e-11 71.2 68 72.1
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.3e-10 70.5 68 73.5
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.5e-09 66.2 115 56.5
Nitab4.5_0010352g0020 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.6e-09 65.1 154 45.5
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 7.3e-09 64.7 132 52.3
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 7.3e-09 64.7 68 61.8
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 9.5e-09 64.3 68 67.6
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 2.1e-08 63.2 108 48.1
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.8e-08 62.8 82 48.8
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 6.2e-08 61.6 107 49.5
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 8.1e-08 61.2 150 42.0
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 4.0e-07 58.9 149 38.9
AagrBONN_evm.TU.Sc2ySwM_228.3972 Anthoceros agrestis HOM05D004577 ORTHO05D005062 5.2e-07 58.5 90 57.8
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 5.2e-07 58.5 148 39.2
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 8.9e-07 57.8 89 61.8
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 1.5e-06 57.0 148 38.5
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 2.0e-06 56.6 113 48.7
Medtr5g032760 Medicago truncatula HOM05D011393 ORTHO05D013493 7.6e-06 54.7 112 43.8


User provided reference genes

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