Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050506 Camellia sinensis var. sinensis HOM05D004144 ORTHO05D004902 1.6e-123 446.0 217 100.0
vmacro18517 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 3.2e-108 395.2 221 86.4
vmacro19339 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 8.3e-104 380.6 258 75.6
Hma1.2p1_0034F.1_g021300 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 7.0e-103 377.5 227 83.3
Lj4A255T25 Lonicera japonica HOM05D004144 ORTHO05D004902 1.9e-100 369.4 231 80.1
Prupe.7G012700 Prunus persica HOM05D004144 ORTHO05D004902 4.2e-100 368.2 215 84.2
SGA_v2.0_scaffold108G30989 Striga asiatica HOM05D004144 ORTHO05D004902 1.2e-99 366.7 192 92.7
RcHm_v2.0_Chr3g0452351 Rosa chinensis HOM05D004144 ORTHO05D004902 2.1e-99 365.9 220 81.8
SalBow3G3518 Salvia bowleyana HOM05D004144 ORTHO05D004902 2.7e-99 365.5 192 92.2
RcHm_v2.0_Chr1g0359421 Rosa chinensis HOM05D004144 ORTHO05D004902 4.7e-99 364.8 220 81.4
Cc07_g12990 Coffea canephora HOM05D004144 ORTHO05D004902 1.0e-98 363.6 214 85.0
CiPaw.04G048600 Carya illinoinensis HOM05D004144 ORTHO05D004902 3.0e-98 362.1 226 79.2
Prupe.3G281100 Prunus persica HOM05D004144 ORTHO05D004902 4.0e-98 361.7 213 83.1
Sc18g0000970 Simmondsia chinensis HOM05D004144 ORTHO05D004902 5.2e-98 361.3 208 84.1
MSTRG.15643 Avicennia marina HOM05D004144 ORTHO05D004902 3.4e-97 358.6 192 91.1
MD07G1041100 Malus domestica HOM05D004144 ORTHO05D004902 3.4e-97 358.6 217 82.0
Nitab4.5_0013309g0010 Nicotiana tabacum HOM05D004144 ORTHO05D004902 3.4e-97 358.6 228 78.9
Atru.chr1.1960 Acer truncatum HOM05D004144 ORTHO05D004902 4.4e-97 358.2 210 84.8
Glyma.18G043100 Glycine max HOM05D004144 ORTHO05D004902 4.4e-97 358.2 193 89.6
Lalb_Chr18g0053671 Lupinus albus HOM05D004144 ORTHO05D004902 4.4e-97 358.2 193 89.1
Lsat_1_v5_gn_3_67200 Lactuca sativa HOM05D004144 ORTHO05D004902 5.7e-97 357.8 221 80.1
Ciclev10002120m.g Citrus clementina HOM05D004144 ORTHO05D004902 7.5e-97 357.5 194 88.7
Sed0013521 Sechium edule HOM05D004144 ORTHO05D004902 7.5e-97 357.5 206 86.4
ClCG07G009570 Citrullus lanatus HOM05D004144 ORTHO05D004902 2.8e-96 355.5 206 85.9
TAR629G3342 Trochodendron aralioides HOM05D004144 ORTHO05D004902 3.7e-96 355.1 194 89.7
Sed0015810 Sechium edule HOM05D004144 ORTHO05D004902 4.9e-96 354.8 206 85.4
VMungo1383G1060 Vigna mungo HOM05D004144 ORTHO05D004902 6.3e-96 354.4 193 88.6
Sopen05g007260 Solanum pennellii HOM05D004144 ORTHO05D004902 8.3e-96 354.0 228 78.9
Glyma.11G213600 Glycine max HOM05D004144 ORTHO05D004902 1.1e-95 353.6 193 88.6
MELO3C017589.2 Cucumis melo HOM05D004144 ORTHO05D004902 1.4e-95 353.2 203 85.7
CAN.G616.15 Capsicum annuum HOM05D004144 ORTHO05D004902 1.8e-95 352.8 229 78.6
Lalb_Chr20g0117051 Lupinus albus HOM05D004144 ORTHO05D004902 4.1e-95 351.7 193 87.6
MBI16_g12479_MAGBIO Magnolia biondii HOM05D004144 ORTHO05D004902 4.1e-95 351.7 195 88.2
Nn1g04486 Nelumbo nucifera HOM05D004144 ORTHO05D004902 4.1e-95 351.7 208 84.1
Phvul.001G227800 Phaseolus vulgaris HOM05D004144 ORTHO05D004902 4.1e-95 351.7 193 87.6
MD02G1272100 Malus domestica HOM05D004144 ORTHO05D004902 5.4e-95 351.3 217 80.6
Eucgr.J01628 Eucalyptus grandis HOM05D004144 ORTHO05D004902 7.0e-95 350.9 197 86.8
Hund18774 Selenicereus undatus HOM05D004144 ORTHO05D004902 7.0e-95 350.9 196 85.7
Migut.H02241 Erythranthe guttata HOM05D004144 ORTHO05D004902 1.6e-94 349.7 189 90.5
Haze_14304 Corylus avellana HOM05D004144 ORTHO05D004902 2.7e-94 349.0 253 70.8
Lj6g0015186 Lotus japonicus HOM05D004144 ORTHO05D004902 2.7e-94 349.0 193 87.0
unitig_32.g10726 Utricularia gibba HOM05D004144 ORTHO05D004902 2.7e-94 349.0 199 86.4
HanXRQChr16g0532751 Helianthus annuus HOM05D004144 ORTHO05D004902 3.5e-94 348.6 193 86.0
EL10Ac1g00114 Beta vulgaris HOM05D004144 ORTHO05D004902 4.5e-94 348.2 222 78.8
Peaxi162Scf00525g00621 Petunia axillaris HOM05D004144 ORTHO05D004902 4.5e-94 348.2 200 86.0
arahy.Tifrunner.gnm1.ann1.87SQNY Arachis hypogaea HOM05D004144 ORTHO05D004902 5.9e-94 347.8 193 86.5
arahy.Tifrunner.gnm1.ann1.U9M4C7 Arachis hypogaea HOM05D004144 ORTHO05D004902 5.9e-94 347.8 193 86.5
Gorai.001G122400 Gossypium raimondii HOM05D004144 ORTHO05D004902 5.9e-94 347.8 191 90.1
Sp1g01500 Schrenkiella parvula HOM05D004144 ORTHO05D004902 7.7e-94 347.4 196 86.2
PGR042G3225 Punica granatum HOM05D004144 ORTHO05D004902 1.0e-93 347.1 216 79.6
Carub.0001s0149 Capsella rubella HOM05D004144 ORTHO05D004902 1.3e-93 346.7 196 85.7
CDE04G3693 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 1.3e-93 346.7 194 86.1
Thhalv10008363m.g Eutrema salsugineum HOM05D004144 ORTHO05D004902 1.3e-93 346.7 196 85.7
Gohir.D07G114100 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.7e-93 346.3 191 89.5
BcaC07g42390 Brassica carinata HOM05D004144 ORTHO05D004902 2.3e-93 345.9 192 87.5
C08p53300 Brassica napus HOM05D004144 ORTHO05D004902 2.3e-93 345.9 192 87.5
BolC8t52845H Brassica oleracea HOM05D004144 ORTHO05D004902 2.3e-93 345.9 192 87.5
Aa31LG1G10050 Aethionema arabicum HOM05D004144 ORTHO05D004902 2.9e-93 345.5 196 85.7
Gohir.A11G203400 Gossypium hirsutum HOM05D004144 ORTHO05D004902 2.9e-93 345.5 191 89.0
AT1G02410 Arabidopsis thaliana HOM05D004144 ORTHO05D004902 3.8e-93 345.1 192 87.0
Ca_17077_v3 Cicer arietinum L. HOM05D004144 ORTHO05D004902 3.8e-93 345.1 189 87.3
THA.LOC104815917 Tarenaya hassleriana HOM05D004144 ORTHO05D004902 3.8e-93 345.1 196 86.7
Oeu062160.1 Olea europaea HOM05D004144 ORTHO05D004902 5.0e-93 344.7 196 84.7
CARHR001740 Cardamine hirsuta HOM05D004144 ORTHO05D004902 8.6e-93 344.0 196 85.2
ECA238G1245 Erigeron canadensis HOM05D004144 ORTHO05D004902 8.6e-93 344.0 192 84.9
Gohir.A07G110500 Gossypium hirsutum HOM05D004144 ORTHO05D004902 8.6e-93 344.0 216 80.6
PGR102G3261 Punica granatum HOM05D004144 ORTHO05D004902 8.6e-93 344.0 206 82.5
Thecc.09G283000 Theobroma cacao HOM05D004144 ORTHO05D004902 8.6e-93 344.0 206 84.0
BcaC07g42317 Brassica carinata HOM05D004144 ORTHO05D004902 1.1e-92 343.6 192 87.0
A09p68730 Brassica napus HOM05D004144 ORTHO05D004902 1.1e-92 343.6 192 87.0
Psat5g142040 Pisum sativum HOM05D004144 ORTHO05D004902 1.1e-92 343.6 193 86.0
Duzib170G0191 Durio zibethinus HOM05D004144 ORTHO05D004902 1.5e-92 343.2 204 83.3
AL1G11770 Arabidopsis lyrata HOM05D004144 ORTHO05D004902 1.9e-92 342.8 196 84.7
Cfa007770 Carpinus fangiana HOM05D004144 ORTHO05D004902 1.9e-92 342.8 226 77.4
Manes.16G049900 Manihot esculenta HOM05D004144 ORTHO05D004902 2.5e-92 342.4 189 85.2
Atru.chr4.1444 Acer truncatum HOM05D004144 ORTHO05D004902 5.6e-92 341.3 259 70.7
SGA_v2.0_scaffold2G00964 Striga asiatica HOM05D004144 ORTHO05D004902 1.2e-91 340.1 192 88.0
A08p37680 Brassica napus HOM05D004144 ORTHO05D004902 2.8e-91 339.0 193 86.5
BraA08t35664Z Brassica rapa HOM05D004144 ORTHO05D004902 2.8e-91 339.0 193 86.5
Medtr3g053650 Medicago truncatula HOM05D004144 ORTHO05D004902 4.7e-91 338.2 195 85.6
TPR.G26653 Trifolium pratense HOM05D004144 ORTHO05D004902 4.7e-91 338.2 190 86.8
GSVIVG01024421001 Vitis vinifera HOM05D004144 ORTHO05D004902 4.7e-91 338.2 231 73.6
C03p00140 Brassica napus HOM05D004144 ORTHO05D004902 8.0e-91 337.4 193 86.0
BraA09t42212Z Brassica rapa HOM05D004144 ORTHO05D004902 1.4e-90 336.7 201 83.1
PSO170G2172 Papaver somniferum HOM05D004144 ORTHO05D004902 4.0e-90 335.1 193 84.5
ATR0626G272 Amborella trichopoda HOM05D004144 ORTHO05D004902 5.2e-90 334.7 182 88.5
BcaC05g24628 Brassica carinata HOM05D004144 ORTHO05D004902 5.2e-90 334.7 192 84.4
A10p01190 Brassica napus HOM05D004144 ORTHO05D004902 8.9e-90 334.0 192 83.3
FAN06G4796 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.5e-89 333.2 213 77.9
BcaB01g06136 Brassica carinata HOM05D004144 ORTHO05D004902 3.4e-89 332.0 192 84.9
BolC3t12580H Brassica oleracea HOM05D004144 ORTHO05D004902 3.4e-89 332.0 192 84.9
CsaV3_UNG144100 Cucumis sativus L. HOM05D004144 ORTHO05D004902 4.4e-89 331.6 243 71.2
FAN01G2657 Fragaria x ananassa HOM05D004144 ORTHO05D004902 5.7e-89 331.3 204 79.9
FAN10G1720 Fragaria x ananassa HOM05D004144 ORTHO05D004902 5.7e-89 331.3 204 79.9
FAN10G4152 Fragaria x ananassa HOM05D004144 ORTHO05D004902 5.7e-89 331.3 204 79.9
HPP92_002286 Vanilla planifolia HOM05D004144 ORTHO05D004902 5.7e-89 331.3 195 83.1
COL.COLO4_19858 Corchorus olitorius HOM05D004144 ORTHO05D004902 7.5e-89 330.9 267 66.7
TWI23G0771 Tripterygium wilfordii HOM05D004144 ORTHO05D004902 1.3e-88 330.1 225 72.9
Actinidia28789 Actinidia chinensis HOM05D004144 ORTHO05D004902 4.9e-88 328.2 196 83.7
Zm00001eb055360 Zea mays HOM05D004144 ORTHO05D004902 1.4e-87 326.6 187 82.9
CsaV3_4G004740 Cucumis sativus L. HOM05D004144 ORTHO05D004902 5.4e-87 324.7 198 80.8
Duzib168G0342 Durio zibethinus HOM05D004144 ORTHO05D004902 7.0e-87 324.3 190 85.8
Oeu048969.2 Olea europaea HOM05D004144 ORTHO05D004902 1.2e-86 323.6 305 59.0
C05p01210 Brassica napus HOM05D004144 ORTHO05D004902 1.6e-86 323.2 196 81.1
BolC5t28904H Brassica oleracea HOM05D004144 ORTHO05D004902 1.6e-86 323.2 197 80.7
BraA10t42397Z Brassica rapa HOM05D004144 ORTHO05D004902 2.7e-86 322.4 197 79.7
CiPaw.03G077800 Carya illinoinensis HOM05D004144 ORTHO05D004902 2.7e-86 322.4 212 77.8
arahy.Tifrunner.gnm1.ann1.F8HJNJ Arachis hypogaea HOM05D004144 ORTHO05D004902 5.9e-86 321.2 246 67.1
Os03g0718600 Oryza sativa ssp. japonica HOM05D004144 ORTHO05D004902 1.7e-85 319.7 181 82.9
Potri.001G078500 Populus trichocarpa HOM05D004144 ORTHO05D004902 3.0e-85 318.9 167 92.8
SEGI_01185 Sequoiadendron giganteum HOM05D004144 ORTHO05D004902 6.6e-85 317.8 181 82.3
Lj2A513G59 Lonicera japonica HOM05D004144 ORTHO05D004902 2.8e-83 312.4 194 81.4
BcaNung06859 Brassica carinata HOM05D004144 ORTHO05D004902 6.2e-83 311.2 192 79.2
BcaB03g13513 Brassica carinata HOM05D004144 ORTHO05D004902 1.2e-81 307.0 191 80.1
Aqoxy3G04002 Aquilegia oxysepala HOM05D004144 ORTHO05D004902 8.3e-80 300.8 207 72.9
Dinv19068 Davidia involucrata HOM05D004144 ORTHO05D000107 8.3e-80 300.8 198 77.8
C04p03290 Brassica napus HOM05D004144 ORTHO05D004902 2.3e-77 292.7 179 79.9
Solyc05g012440.4 Solanum lycopersicum HOM05D004144 ORTHO05D004902 5.0e-77 291.6 155 91.0
SMO169G0145 Selaginella moellendorffii HOM05D004144 ORTHO05D004902 1.2e-75 287.0 180 74.4
BcaB01g06133 Brassica carinata HOM05D004144 ORTHO05D004902 3.6e-75 285.4 191 75.4
PSO782G2695 Papaver somniferum HOM05D004144 ORTHO05D004902 6.2e-75 284.6 152 90.1
Rhsim08G0020500 Rhododendron simsii HOM05D004144 ORTHO05D004902 1.4e-74 283.5 228 65.8
FAN03G0820 Fragaria x ananassa HOM05D004144 ORTHO05D004902 2.6e-73 279.3 149 90.6
Mapoly0070s0059 Marchantia polymorpha HOM05D004144 ORTHO05D004902 7.5e-73 277.7 185 71.4
Rhsim05G0054900 Rhododendron simsii HOM05D004144 ORTHO05D004902 4.9e-72 275.0 192 74.5
Medtr3g064810 Medicago truncatula HOM05D004144 ORTHO05D004902 3.2e-71 272.3 192 74.0
Sabra01G0055800 Salix brachista HOM05D004144 ORTHO05D004902 7.1e-71 271.2 363 46.6
AagrBONN_evm.TU.Sc2ySwM_228.342 Anthoceros agrestis HOM05D004144 ORTHO05D004902 1.9e-68 263.1 184 71.2
CBR_g51986 Chara braunii HOM05D004144 ORTHO05D004902 8.1e-67 257.7 189 66.1
QL02p060046 Quercus lobata HOM05D004144 ORTHO05D004902 5.4e-63 245.0 165 77.0
AUR62023515 Chenopodium quinoa HOM05D004144 ORTHO05D004902 2.1e-62 243.0 178 68.5
CANSAT35G0424 Cannabis sativa HOM05D004144 ORTHO05D004902 2.5e-60 236.1 134 85.8
Nitab4.5_0000905g0140 Nicotiana tabacum HOM05D004144 ORTHO05D004902 2.8e-59 232.6 167 74.3
MCO11G668 Micromonas commoda HOM05D004144 ORTHO05D004902 3.4e-57 225.7 176 60.2
AUR62037409 Chenopodium quinoa HOM05D004144 ORTHO05D004902 2.2e-56 223.0 142 79.6
Cre01.g055550 Chlamydomonas reinhardtii HOM05D004144 ORTHO05D004902 1.6e-54 216.9 198 55.6
SHI20752 Sapria himalayana HOM05D004144 ORTHO05D004902 3.0e-53 212.6 145 73.8
Hma1.2p1_0158F.1_g069830 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 6.4e-48 194.9 167 64.1
PRCOL_00006103 Prasinoderma coloniale HOM05D004144 ORTHO05D004902 5.1e-45 185.3 188 51.6
Haze_26263 Corylus avellana HOM05D004144 ORTHO05D004902 1.8e-42 176.8 177 46.9
CsaV3_UNG141080 Cucumis sativus L. HOM05D004144 ORTHO05D004902 1.0e-37 161.0 107 74.8
CsaV3_UNG216460 Cucumis sativus L. HOM05D004144 ORTHO05D004902 1.0e-37 161.0 107 74.8
Haze_26986 Corylus avellana HOM05D004144 ORTHO05D004902 3.9e-37 159.1 180 41.7
BcaNung07044 Brassica carinata HOM05D004144 ORTHO05D004902 1.1e-36 157.5 94 81.9
BcaB03g15782 Brassica carinata HOM05D004144 ORTHO05D004902 1.9e-36 156.8 149 57.7
Cfa022599 Carpinus fangiana HOM05D004144 ORTHO05D004902 1.2e-33 147.5 146 52.7
BcaB03g13511 Brassica carinata HOM05D004144 ORTHO05D004902 7.6e-33 144.8 179 51.4
BcaB08g36056 Brassica carinata HOM05D004144 ORTHO05D004902 8.4e-32 141.4 100 75.0
DCAR_025183 Daucus carota HOM05D002069 ORTHO05D004902 1.4e-31 140.6 77 90.9
Gohir.A10G080150 Gossypium hirsutum HOM05D004144 ORTHO05D004902 2.3e-29 133.3 97 72.2
Pp3c16_1230 Physcomitrium patens HOM05D004144 ORTHO05D004902 8.7e-29 131.3 95 66.3
BolC9t57687H Brassica oleracea HOM05D004144 ORTHO05D004902 1.6e-27 127.1 92 77.2
TAR002G0001 Trochodendron aralioides HOM05D004144 ORTHO05D004902 1.5e-25 120.6 74 79.7
Dinv36681 Davidia involucrata HOM05D004144 ORTHO05D004902 5.9e-25 118.6 107 60.7
BcaNung06862 Brassica carinata HOM05D004144 ORTHO05D004902 1.3e-24 117.5 91 68.1
AUR62038774 Chenopodium quinoa HOM05D004144 ORTHO05D004902 3.2e-23 112.8 75 74.7
BcaC02g12462 Brassica carinata HOM05D004144 ORTHO05D004902 7.2e-23 111.7 69 76.8
BcaC04g20051 Brassica carinata HOM05D004144 ORTHO05D004902 3.9e-21 105.9 95 63.2
Gohir.A08G125401 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.9e-20 103.6 107 56.1
BcaNung06861 Brassica carinata HOM05D004144 ORTHO05D004902 6.3e-19 98.6 66 71.2
C09p48370 Brassica napus HOM05D004144 ORTHO05D004902 3.1e-18 96.3 85 61.2
arahy.Tifrunner.gnm1.ann1.GZZ31L Arachis hypogaea HOM05D001327 ORTHO05D004902 1.3e-16 90.9 53 79.2
Oeu009435.1 Olea europaea HOM05D004144 ORTHO05D004902 3.8e-16 89.4 48 89.6
HanXRQChr03g0088171 Helianthus annuus HOM05D004144 ORTHO05D004902 3.2e-15 86.3 50 80.0
HanXRQChr13g0395861 Helianthus annuus HOM05D004144 ORTHO05D004902 3.2e-15 86.3 50 80.0
CDE06G2511 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 7.2e-15 85.1 57 68.4
BcaC05g24626 Brassica carinata HOM05D004144 ORTHO05D004902 2.1e-14 83.6 53 75.5
arahy.Tifrunner.gnm1.ann1.9TQH81 Arachis hypogaea HOM05D001327 ORTHO05D001271 3.9e-13 79.3 72 62.5
arahy.Tifrunner.gnm1.ann1.X1YH8V Arachis hypogaea HOM05D004144 ORTHO05D038922 8.2e-11 71.6 63 61.9
Oeu009434.1 Olea europaea HOM05D004144 ORTHO05D004902 3.1e-10 69.7 36 91.7


User provided reference genes

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