Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.9e-150 535.8 270 100.0
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 6.9e-100 367.9 283 69.6
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.5e-75 287.0 283 57.6
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 8.5e-74 281.2 272 58.8
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.6e-72 276.9 285 56.1
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.4e-71 273.9 347 50.4
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 6.7e-63 245.0 297 51.9
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 3.3e-62 242.7 284 52.8
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 7.4e-62 241.5 281 50.5
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 2.2e-61 240.0 283 51.9
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 4.1e-60 235.7 230 59.6
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.6e-59 233.8 162 75.9
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 3.5e-59 232.6 285 48.4
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 7.7e-59 231.5 284 51.4
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 3.8e-58 229.2 279 48.7
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 5.0e-58 228.8 256 51.2
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.5e-57 227.3 281 49.8
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.9e-57 226.9 297 46.8
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.2e-56 224.2 304 47.7
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 2.7e-56 223.0 283 48.1
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 3.6e-56 222.6 279 51.3
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 1.0e-55 221.1 284 46.8
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.8e-55 220.3 283 48.4
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.8e-55 220.3 286 47.9
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 6.8e-55 218.4 322 44.7
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 9.8e-54 214.5 292 46.2
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.3e-53 214.2 290 47.2
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 1.7e-53 213.8 232 54.3
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.2e-53 213.4 282 46.8
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 2.2e-53 213.4 205 58.0
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 3.7e-53 212.6 284 45.4
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 3.7e-53 212.6 284 45.4
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 1.1e-52 211.1 288 46.5
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 5.4e-52 208.8 286 46.5
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.2e-51 207.6 290 44.1
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.2e-51 207.6 291 44.0
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 1.2e-51 207.6 289 47.1
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 4.5e-51 205.7 290 42.8
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.0e-50 204.5 201 55.2
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 6.5e-50 201.8 320 42.2
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 5.5e-49 198.7 294 42.9
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 7.2e-49 198.4 279 47.0
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.2e-48 197.6 308 46.4
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 1.6e-48 197.2 293 44.0
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.1e-48 196.8 267 48.3
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 6.1e-48 195.3 284 43.3
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 1.8e-47 193.7 289 42.2
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.8e-47 193.7 286 41.6
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 2.3e-47 193.4 281 44.1
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 2.3e-47 193.4 290 42.8
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 3.0e-47 193.0 286 42.3
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.5e-46 190.7 212 51.9
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.0e-46 190.3 286 42.0
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 2.0e-46 190.3 283 44.2
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 2.6e-46 189.9 287 43.2
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 2.6e-46 189.9 263 44.1
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 3.4e-46 189.5 276 46.0
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 5.7e-46 188.7 213 49.8
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 7.5e-46 188.3 276 45.7
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 7.5e-46 188.3 333 40.8
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 9.8e-46 188.0 282 40.4
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 1.3e-45 187.6 282 40.4
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.7e-45 187.2 285 40.7
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.7e-45 187.2 285 43.2
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 2.2e-45 186.8 311 40.5
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 3.7e-45 186.0 311 40.8
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 4.9e-45 185.7 283 40.6
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.4e-44 183.3 216 49.1
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 3.1e-44 183.0 288 42.4
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 4.1e-44 182.6 261 49.4
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 4.1e-44 182.6 274 43.8
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 2.0e-43 180.3 209 49.8
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 4.5e-43 179.1 256 47.3
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 4.5e-43 179.1 290 41.0
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 5.9e-43 178.7 276 43.5
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 5.0e-42 175.6 290 43.1
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 8.6e-42 174.9 238 48.7
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.6e-42 174.9 204 49.5
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.6e-42 174.9 204 49.5
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.6e-42 174.9 216 47.2
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 8.6e-42 174.9 202 47.5
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 2.5e-41 173.3 220 46.8
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 4.2e-41 172.6 287 41.8
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 9.5e-41 171.4 379 36.1
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.2e-40 171.0 314 36.0
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.6e-40 170.6 220 46.4
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 2.1e-40 170.2 296 38.9
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 3.6e-40 169.5 201 48.3
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 4.7e-40 169.1 275 42.5
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 4.7e-40 169.1 220 45.9
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 8.0e-40 168.3 289 41.2
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 3.0e-39 166.4 246 44.3
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.0e-39 166.4 404 35.1
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.2e-38 164.5 196 48.0
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 4.4e-38 162.5 283 41.0
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 7.5e-38 161.8 207 47.8
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 7.5e-38 161.8 256 43.0
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 2.9e-37 159.8 255 43.1
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 6.4e-37 158.7 247 43.7
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 6.4e-37 158.7 247 43.7
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 8.3e-37 158.3 226 41.6
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 3.2e-36 156.4 222 42.3
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.2e-35 154.5 288 37.8
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 7.8e-35 151.8 285 38.2
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 3.9e-34 149.4 210 43.3
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 1.1e-33 147.9 233 44.6
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 1.5e-33 147.5 296 37.8
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.9e-33 147.1 295 36.3
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 4.3e-33 146.0 166 50.0
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 9.5e-33 144.8 257 40.1
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 9.5e-33 144.8 209 45.5
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 3.6e-32 142.9 335 33.7
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 8.9e-31 138.3 295 35.6
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.2e-30 137.9 281 35.6
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.2e-30 137.9 287 36.2
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.2e-30 137.9 169 49.7
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 2.0e-30 137.1 291 35.7
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 2.0e-30 137.1 291 35.7
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 2.0e-30 137.1 291 35.7
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 2.6e-30 136.7 166 48.2
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 3.4e-30 136.3 269 39.8
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.3e-29 134.4 291 35.1
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.3e-29 134.4 291 35.4
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.7e-29 134.0 188 47.3
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 2.2e-29 133.7 297 34.3
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.9e-29 133.3 216 39.8
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 1.2e-27 127.9 172 45.3
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 6.8e-23 112.1 281 34.9
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 8.3e-21 105.1 271 35.1
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 1.1e-20 104.8 280 30.7
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 7.1e-20 102.1 303 31.7
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 4.6e-19 99.4 296 30.7
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 3.0e-18 96.7 83 59.0
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 3.0e-18 96.7 291 32.3
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 8.6e-18 95.1 297 31.6
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.2e-16 91.3 83 56.6
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.6e-16 90.9 281 31.0
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 2.1e-16 90.5 299 30.1
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 1.2e-14 84.7 100 52.0
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 4.9e-13 79.3 69 58.0
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 7.3e-09 65.5 133 36.8
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 9.6e-09 65.1 188 30.3
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 4.7e-08 62.8 188 29.8
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 4.7e-08 62.8 54 57.4
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 6.2e-08 62.4 106 39.6
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 2.4e-07 60.5 196 29.1
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 2.4e-07 60.5 187 28.3
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 3.1e-07 60.1 130 35.4
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 1.5e-06 57.8 188 28.2
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 2.6e-06 57.0 96 39.6
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 4.4e-06 56.2 138 36.2
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 4.4e-06 56.2 265 25.3


User provided reference genes

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