Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050476 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 6.3e-82 307.4 154 100.0
CSS0038142 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 1.0e-79 300.1 154 98.7
Rhsim08G0175500 Rhododendron simsii HOM05D003444 ORTHO05D003963 7.3e-30 134.4 78 91.0
PGR083G1868 Punica granatum HOM05D003444 ORTHO05D003963 9.6e-30 134.0 83 84.3
CSS0046637 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 1.6e-29 133.3 87 82.8
Dinv38555 Davidia involucrata HOM05D003444 ORTHO05D003963 2.8e-29 132.5 76 90.8
Lj5A128T62 Lonicera japonica HOM05D003444 ORTHO05D003963 3.6e-29 132.1 77 89.6
CSS0016754 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 6.2e-29 131.3 77 89.6
GSVIVG01007683001 Vitis vinifera HOM05D003444 ORTHO05D003963 6.2e-29 131.3 83 84.3
Eucgr.B03880 Eucalyptus grandis HOM05D003444 ORTHO05D003963 8.1e-29 131.0 83 80.7
Actinidia19346 Actinidia chinensis HOM05D003444 ORTHO05D003963 1.1e-28 130.6 76 93.4
Thecc.03G023900 Theobroma cacao HOM05D003444 ORTHO05D003963 1.1e-28 130.6 84 79.8
TAR629G1253 Trochodendron aralioides HOM05D003444 ORTHO05D003963 2.4e-28 129.4 88 78.4
Ciclev10020974m.g Citrus clementina HOM05D003444 ORTHO05D003963 3.1e-28 129.0 84 79.8
Hund09457 Selenicereus undatus HOM05D003444 ORTHO05D003963 3.1e-28 129.0 77 81.8
Glyma.17G086600 Glycine max HOM05D003444 ORTHO05D003963 4.0e-28 128.6 83 81.9
Glyma.05G040200 Glycine max HOM05D003444 ORTHO05D003963 5.2e-28 128.3 86 79.1
Sc12g0005160 Simmondsia chinensis HOM05D003444 ORTHO05D003963 6.8e-28 127.9 77 85.7
CANSAT80G2021 Cannabis sativa HOM05D003444 ORTHO05D003963 8.9e-28 127.5 83 79.5
Gohir.A07G063100 Gossypium hirsutum HOM05D003444 ORTHO05D003963 8.9e-28 127.5 83 79.5
Dinv20618 Davidia involucrata HOM05D003444 ORTHO05D003963 2.0e-27 126.3 76 86.8
Nn4g22663 Nelumbo nucifera HOM05D003444 ORTHO05D003963 2.0e-27 126.3 83 80.7
unitig_8.g3056 Utricularia gibba HOM05D003444 ORTHO05D003963 2.0e-27 126.3 76 84.2
Duzib205G1696 Durio zibethinus HOM05D003444 ORTHO05D003963 2.6e-27 125.9 100 69.0
TWI79G0312 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 2.6e-27 125.9 92 76.1
CiPaw.11G022500 Carya illinoinensis HOM05D003444 ORTHO05D003963 4.4e-27 125.2 84 78.6
Duzib068G1143 Durio zibethinus HOM05D003444 ORTHO05D003963 4.4e-27 125.2 84 77.4
COL.COLO4_30123 Corchorus olitorius HOM05D003444 ORTHO05D003963 5.8e-27 124.8 83 77.1
MD06G1169900 Malus domestica HOM05D003444 ORTHO05D003963 5.8e-27 124.8 83 78.3
Manes.14G062700 Manihot esculenta HOM05D003444 ORTHO05D003963 5.8e-27 124.8 83 79.5
MSTRG.23156 Avicennia marina HOM05D003444 ORTHO05D003963 7.6e-27 124.4 76 84.2
Cc04_g12590 Coffea canephora HOM05D003444 ORTHO05D003963 9.9e-27 124.0 76 81.6
Prupe.5G169400 Prunus persica HOM05D003444 ORTHO05D003963 9.9e-27 124.0 83 78.3
SGA_v2.0_scaffold90G27874 Striga asiatica HOM05D003444 ORTHO05D003963 1.3e-26 123.6 76 82.9
Sed0021330 Sechium edule HOM05D003444 ORTHO05D003963 1.7e-26 123.2 79 82.3
TWI75G1457 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 1.7e-26 123.2 92 72.8
TPR.G37557 Trifolium pratense HOM05D003444 ORTHO05D003963 2.9e-26 122.5 83 78.3
SGA_v2.0_scaffold25G10811 Striga asiatica HOM05D003444 ORTHO05D003963 3.8e-26 122.1 76 82.9
Haze_07554 Corylus avellana HOM05D003444 ORTHO05D003963 4.9e-26 121.7 79 79.7
Aqoxy1G03753 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 8.4e-26 120.9 83 75.9
Aqoxy3G02821 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 8.4e-26 120.9 83 75.9
arahy.Tifrunner.gnm1.ann1.9G140L Arachis hypogaea HOM05D003444 ORTHO05D003963 8.4e-26 120.9 77 80.5
arahy.Tifrunner.gnm1.ann1.NDZJ5A Arachis hypogaea HOM05D003444 ORTHO05D003963 8.4e-26 120.9 92 69.6
Ah.11g051380 Amaranthus hybridus HOM05D003444 ORTHO05D003963 1.9e-25 119.8 76 78.9
arahy.Tifrunner.gnm1.ann1.7R0LHS Arachis hypogaea HOM05D003444 ORTHO05D003963 2.4e-25 119.4 76 80.3
FAN13G0471 Fragaria x ananassa HOM05D003444 ORTHO05D003963 2.4e-25 119.4 79 75.9
Hma1.2p1_0046F.1_g026860 Hydrangea macrophylla HOM05D003444 ORTHO05D003963 2.4e-25 119.4 68 91.2
arahy.Tifrunner.gnm1.ann1.9FBM9V Arachis hypogaea HOM05D003444 ORTHO05D003963 3.2e-25 119.0 83 73.5
arahy.Tifrunner.gnm1.ann1.BAEJ4E Arachis hypogaea HOM05D003444 ORTHO05D003963 3.2e-25 119.0 83 73.5
AUR62028748 Chenopodium quinoa HOM05D003444 ORTHO05D003963 3.2e-25 119.0 101 63.4
Peaxi162Scf00089g01529 Petunia axillaris HOM05D003444 ORTHO05D003963 4.2e-25 118.6 77 80.5
MBI10_g32035_MAGBIO Magnolia biondii HOM05D003444 ORTHO05D003963 5.4e-25 118.2 83 74.7
arahy.Tifrunner.gnm1.ann1.WUU0A4 Arachis hypogaea HOM05D003444 ORTHO05D003963 7.1e-25 117.9 77 77.9
Ca_21949_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 7.1e-25 117.9 83 74.7
RcHm_v2.0_Chr7g0192981 Rosa chinensis HOM05D003444 ORTHO05D003963 7.1e-25 117.9 77 76.6
PGSC0003DMG400018108 Solanum tuberosum HOM05D003444 ORTHO05D003963 7.1e-25 117.9 76 80.3
FAN04G2640 Fragaria x ananassa HOM05D003444 ORTHO05D003963 9.3e-25 117.5 77 76.6
Manes.06G108200 Manihot esculenta HOM05D003444 ORTHO05D003963 9.3e-25 117.5 84 75.0
FvH4_5g05840 Fragaria vesca HOM05D003444 ORTHO05D003963 1.2e-24 117.1 77 76.6
FAN18G3108 Fragaria x ananassa HOM05D003444 ORTHO05D003963 1.2e-24 117.1 77 76.6
Sopen03g031580 Solanum pennellii HOM05D003444 ORTHO05D003963 1.2e-24 117.1 85 74.1
Cfa019176 Carpinus fangiana HOM05D003444 ORTHO05D003963 1.6e-24 116.7 75 81.3
arahy.Tifrunner.gnm1.ann1.GAE861 Arachis hypogaea HOM05D003444 ORTHO05D003963 2.1e-24 116.3 83 72.3
arahy.Tifrunner.gnm1.ann1.N68Y16 Arachis hypogaea HOM05D003444 ORTHO05D003963 2.1e-24 116.3 81 75.3
QL10p008500 Quercus lobata HOM05D003444 ORTHO05D003963 2.1e-24 116.3 74 82.4
QL10p008640 Quercus lobata HOM05D003444 ORTHO05D003963 2.1e-24 116.3 67 89.6
CiPaw.12G029000 Carya illinoinensis HOM05D003444 ORTHO05D003963 2.7e-24 115.9 74 82.4
AUR62008171 Chenopodium quinoa HOM05D003444 ORTHO05D003963 2.7e-24 115.9 77 75.3
Os06g0474200 Oryza sativa ssp. japonica HOM05D003444 ORTHO05D003963 2.7e-24 115.9 92 68.5
Solyc03g112520.3 Solanum lycopersicum HOM05D003444 ORTHO05D003963 2.7e-24 115.9 85 72.9
Aqoxy3G01091 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 6.0e-24 114.8 80 76.2
FAN08G2080 Fragaria x ananassa HOM05D003444 ORTHO05D003963 7.8e-24 114.4 77 75.3
TPR.G7254 Trifolium pratense HOM05D003444 ORTHO05D003963 7.8e-24 114.4 83 72.3
vmacro19323 Vaccinium macrocarpon HOM05D003444 ORTHO05D003963 7.8e-24 114.4 78 79.5
DCAR_026161 Daucus carota HOM05D003444 ORTHO05D003963 1.0e-23 114.0 76 76.3
VMungo1309G2319 Vigna mungo HOM05D003444 ORTHO05D003963 1.7e-23 113.2 76 73.7
MELO3C026275.2 Cucumis melo HOM05D003444 ORTHO05D003963 2.3e-23 112.8 74 81.1
CsaV3_1G001270 Cucumis sativus L. HOM05D003444 ORTHO05D003963 2.3e-23 112.8 74 81.1
Gorai.001G071300 Gossypium raimondii HOM05D003444 ORTHO05D003963 2.3e-23 112.8 74 78.4
HPP92_013532 Vanilla planifolia HOM05D003444 ORTHO05D003963 2.3e-23 112.8 93 64.5
ClCG09G013270 Citrullus lanatus HOM05D003444 ORTHO05D003963 3.0e-23 112.5 69 87.0
Glyma.06G179400 Glycine max HOM05D003444 ORTHO05D003963 5.1e-23 111.7 83 71.1
PSO017G6313 Papaver somniferum HOM05D003444 ORTHO05D003963 8.7e-23 110.9 75 78.7
CDE11G0533 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 1.1e-22 110.5 83 69.9
ClCG06G017220 Citrullus lanatus HOM05D003444 ORTHO05D003963 1.9e-22 109.8 68 83.8
EL10Ac5g10690 Beta vulgaris HOM05D003444 ORTHO05D003963 2.5e-22 109.4 91 70.3
Eucgr.B00240 Eucalyptus grandis HOM05D003444 ORTHO05D003963 2.5e-22 109.4 73 74.0
PSO478G2857 Papaver somniferum HOM05D003444 ORTHO05D003963 2.5e-22 109.4 74 78.4
arahy.Tifrunner.gnm1.ann1.04BT9F Arachis hypogaea HOM05D003444 ORTHO05D003963 3.3e-22 109.0 76 76.3
BcaB02g07746 Brassica carinata HOM05D003444 ORTHO05D003963 4.3e-22 108.6 83 65.1
Medtr0325s0020 Medicago truncatula HOM05D003444 ORTHO05D003963 4.3e-22 108.6 83 69.9
A07p22020 Brassica napus HOM05D003444 ORTHO05D003963 5.6e-22 108.2 83 66.3
BraA07t29885Z Brassica rapa HOM05D003444 ORTHO05D003963 5.6e-22 108.2 83 66.3
Phvul.002G107400 Phaseolus vulgaris HOM05D003444 ORTHO05D003963 7.3e-22 107.8 73 72.6
Psat4g060120 Pisum sativum HOM05D003444 ORTHO05D003963 1.3e-21 107.1 75 74.7
Zm00001eb209200 Zea mays HOM05D003444 ORTHO05D003963 1.6e-21 106.7 80 70.0
CDE05G0978 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 2.1e-21 106.3 75 73.3
BcaNung05459 Brassica carinata HOM05D003444 ORTHO05D003963 2.8e-21 105.9 83 65.1
C06p22000 Brassica napus HOM05D003444 ORTHO05D003963 2.8e-21 105.9 83 65.1
BolC6t37388H Brassica oleracea HOM05D003444 ORTHO05D003963 2.8e-21 105.9 83 65.1
Cpa.g.sc35.80 Carica papaya HOM05D003444 ORTHO05D003963 6.2e-21 104.8 76 71.1
Lsat_1_v5_gn_1_28101 Lactuca sativa HOM05D003444 ORTHO05D003963 8.1e-21 104.4 66 78.8
SEGI_34823 Sequoiadendron giganteum HOM05D003444 ORTHO05D003963 8.1e-21 104.4 79 67.1
arahy.Tifrunner.gnm1.ann1.BQH8MW Arachis hypogaea HOM05D003444 ORTHO05D003963 1.4e-20 103.6 95 64.2
Migut.G00959 Erythranthe guttata HOM05D003444 ORTHO05D003963 1.4e-20 103.6 62 87.1
Lalb_Chr12g0201761 Lupinus albus HOM05D003444 ORTHO05D003963 1.8e-20 103.2 75 74.7
Nitab4.5_0001647g0010 Nicotiana tabacum HOM05D003444 ORTHO05D003963 1.8e-20 103.2 66 80.3
SalBow5G0548 Salvia bowleyana HOM05D003444 ORTHO05D003963 1.8e-20 103.2 66 78.8
Aa31sc491G40 Aethionema arabicum HOM05D003444 ORTHO05D003963 2.4e-20 102.8 83 62.7
Potri.002G197600 Populus trichocarpa HOM05D003444 ORTHO05D003963 2.4e-20 102.8 73 75.3
arahy.Tifrunner.gnm1.ann1.Q3H55W Arachis hypogaea HOM05D003444 ORTHO05D003963 3.1e-20 102.4 73 72.6
CAN.G338.8 Capsicum annuum HOM05D003444 ORTHO05D003963 3.1e-20 102.4 67 79.1
arahy.Tifrunner.gnm1.ann1.L06CU6 Arachis hypogaea HOM05D001287 ORTHO05D003963 9.0e-20 100.9 118 50.0
Lj4g0001447 Lotus japonicus HOM05D003444 ORTHO05D003963 1.5e-19 100.1 73 71.2
Nitab4.5_0001284g0080 Nicotiana tabacum HOM05D003444 ORTHO05D003963 1.5e-19 100.1 66 78.8
HanXRQChr02g0035691 Helianthus annuus HOM05D003444 ORTHO05D003963 2.0e-19 99.8 65 78.5
Ca_16152_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 4.4e-19 98.6 72 70.8
arahy.Tifrunner.gnm1.ann1.3QB15W Arachis hypogaea HOM05D001287 ORTHO05D003963 5.8e-19 98.2 94 58.5
Glyma.04G186400 Glycine max HOM05D003444 ORTHO05D003963 5.8e-19 98.2 72 70.8
Medtr3g077320 Medicago truncatula HOM05D003444 ORTHO05D003963 5.8e-19 98.2 72 70.8
Sed0013109 Sechium edule HOM05D003444 ORTHO05D003963 7.6e-19 97.8 83 61.4
Lalb_Chr08g0236641 Lupinus albus HOM05D003444 ORTHO05D003963 9.9e-19 97.4 60 83.3
arahy.Tifrunner.gnm1.ann1.VE7RCJ Arachis hypogaea HOM05D003444 ORTHO05D003963 1.7e-18 96.7 61 83.6
arahy.Tifrunner.gnm1.ann1.P2M8BS Arachis hypogaea HOM05D003444 ORTHO05D003963 2.2e-18 96.3 67 76.1
arahy.Tifrunner.gnm1.ann1.XBI7UF Arachis hypogaea HOM05D003444 ORTHO05D003963 2.2e-18 96.3 63 81.0
AUR62029932 Chenopodium quinoa HOM05D003444 ORTHO05D003963 2.2e-18 96.3 65 75.4
AUR62044439 Chenopodium quinoa HOM05D003444 ORTHO05D003963 2.9e-18 95.9 64 76.6
ECA247G0281 Erigeron canadensis HOM05D003444 ORTHO05D003963 4.9e-18 95.1 66 72.7
arahy.Tifrunner.gnm1.ann1.T862AX Arachis hypogaea HOM05D003444 ORTHO05D003963 1.9e-17 93.2 67 74.6
arahy.Tifrunner.gnm1.ann1.WYE7TV Arachis hypogaea HOM05D003444 ORTHO05D003963 1.9e-17 93.2 61 80.3
Gohir.D07G067700 Gossypium hirsutum HOM05D003444 ORTHO05D003963 1.9e-17 93.2 58 77.6
Lj1g0020971 Lotus japonicus HOM05D003444 ORTHO05D003963 1.9e-17 93.2 69 69.6
ATR1152G109 Amborella trichopoda HOM05D003444 ORTHO05D003963 2.4e-17 92.8 72 70.8
C08p29430 Brassica napus HOM05D003444 ORTHO05D003963 3.2e-17 92.4 75 62.7
BolC8t50544H Brassica oleracea HOM05D003444 ORTHO05D003963 3.2e-17 92.4 75 62.7
Thhalv10010523m.g Eutrema salsugineum HOM05D003444 ORTHO05D003963 3.2e-17 92.4 72 63.9
A09p47170 Brassica napus HOM05D003444 ORTHO05D003963 4.2e-17 92.0 73 63.0
BraA09t40179Z Brassica rapa HOM05D003444 ORTHO05D003963 4.2e-17 92.0 73 63.0
Sp5g08230 Schrenkiella parvula HOM05D003444 ORTHO05D003963 4.2e-17 92.0 73 63.0
HanXRQChr16g0504631 Helianthus annuus HOM05D003444 ORTHO05D003963 5.4e-17 91.7 67 74.6
Zm00001eb231610 Zea mays HOM05D003444 ORTHO05D003963 5.4e-17 91.7 73 69.9
TPR.G31058 Trifolium pratense HOM05D003444 ORTHO05D003963 2.1e-16 89.7 67 70.1
CARHR082370 Cardamine hirsuta HOM05D003444 ORTHO05D003963 3.5e-16 89.0 72 61.1
THA.LOC104809841 Tarenaya hassleriana HOM05D003444 ORTHO05D003963 3.5e-16 89.0 124 44.4
Psat0s2597g0040 Pisum sativum HOM05D003444 ORTHO05D003963 4.6e-16 88.6 67 70.1
Migut.O00133 Erythranthe guttata HOM05D003444 ORTHO05D003963 7.9e-16 87.8 61 77.0
AT3G54170 Arabidopsis thaliana HOM05D003444 ORTHO05D003963 1.3e-15 87.0 69 63.8
AL5G35210 Arabidopsis lyrata HOM05D003444 ORTHO05D003963 1.7e-15 86.7 69 63.8
BcaB01g00212 Brassica carinata HOM05D003444 ORTHO05D003963 1.7e-15 86.7 69 63.8
Carub.0005s2076 Capsella rubella HOM05D003444 ORTHO05D003963 1.7e-15 86.7 69 63.8
Oeu046785.1 Olea europaea HOM05D003444 ORTHO05D003963 1.7e-15 86.7 62 80.6
BcaC08g44673 Brassica carinata HOM05D003444 ORTHO05D003963 5.1e-15 85.1 84 56.0
COL.COLO4_15592 Corchorus olitorius HOM05D003444 ORTHO05D003963 5.1e-15 85.1 55 80.0
Mapoly0061s0094 Marchantia polymorpha HOM05D003444 ORTHO05D003963 5.6e-14 81.6 83 48.2
SGA_v2.0_scaffold90G27871 Striga asiatica HOM05D003444 ORTHO05D003963 7.3e-14 81.3 51 74.5
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 3.1e-12 75.9 56 64.3
AUR62042203 Chenopodium quinoa HOM05D000491 ORTHO05D011383 2.0e-11 73.2 78 55.1
AagrBONN_evm.TU.Sc2ySwM_362.1384 Anthoceros agrestis HOM05D003444 ORTHO05D003963 7.6e-11 71.2 83 41.0
BolC6t37380H Brassica oleracea HOM05D000214 ORTHO05D000131 7.6e-11 71.2 59 55.9
arahy.Tifrunner.gnm1.ann1.B6SL80 Arachis hypogaea HOM05D003444 ORTHO05D003963 9.9e-11 70.9 41 95.1
Pp3c8_10480 Physcomitrium patens HOM05D003444 ORTHO05D003963 6.4e-10 68.2 75 44.0
Lsat_1_v5_gn_4_76300 Lactuca sativa HOM05D003444 ORTHO05D003963 9.3e-09 64.3 85 48.2
SMO270G0141 Selaginella moellendorffii HOM05D003444 ORTHO05D003963 2.7e-08 62.8 100 31.0
BcaB02g08475 Brassica carinata HOM05D003444 ORTHO05D027807 4.6e-08 62.0 59 49.2
SMO270G0025 Selaginella moellendorffii HOM05D003444 ORTHO05D003963 4.6e-08 62.0 84 34.5
Lsat_1_v5_gn_5_139960 Lactuca sativa HOM05D003444 ORTHO05D003963 1.0e-07 60.8 84 45.2
BcaC08g44671 Brassica carinata HOM05D003444 ORTHO05D003963 2.3e-07 59.7 51 52.9
C06p21950 Brassica napus HOM05D003444 ORTHO05D003963 2.3e-07 59.7 51 52.9
A07p22000 Brassica napus HOM05D003444 ORTHO05D003963 1.5e-06 57.0 49 53.1
BraA07t29883Z Brassica rapa HOM05D003444 ORTHO05D003963 1.5e-06 57.0 49 53.1


User provided reference genes

Program Settings