Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 9.0e-78 293.5 147 100.0
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 3.8e-28 128.6 92 70.7
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 2.5e-27 125.9 94 67.0
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 5.5e-27 124.8 92 72.8
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 2.1e-26 122.9 92 75.0
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 8.0e-26 120.9 91 71.4
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 7.5e-24 114.4 91 65.9
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 2.2e-23 112.8 93 66.7
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 9.1e-22 107.5 102 59.8
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 2.7e-21 105.9 91 64.8
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 5.9e-21 104.8 92 63.0
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 5.0e-20 101.7 94 60.6
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 1.1e-19 100.5 92 62.0
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 1.9e-19 99.8 108 53.7
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 2.5e-19 99.4 99 51.5
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 4.2e-19 98.6 92 62.0
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 9.5e-19 97.4 93 53.8
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 3.6e-18 95.5 101 52.5
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 4.7e-18 95.1 103 54.4
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 8.0e-18 94.4 92 56.5
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 8.0e-18 94.4 91 56.0
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 8.0e-18 94.4 93 58.1
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 1.8e-17 93.2 91 53.8
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.8e-17 93.2 91 53.8
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 4.0e-17 92.0 91 52.7
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 5.2e-17 91.7 92 57.6
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 6.8e-17 91.3 91 52.7
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 6.8e-17 91.3 91 53.8
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 1.5e-16 90.1 102 57.8
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 4.4e-16 88.6 91 51.6
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 5.7e-16 88.2 97 52.6
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.3e-15 87.0 93 55.9
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 3.7e-15 85.5 95 49.5
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 4.9e-15 85.1 102 51.0
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 4.9e-15 85.1 93 54.8
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 4.9e-15 85.1 92 54.3
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 1.1e-14 84.0 96 51.0
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 1.4e-14 83.6 117 46.2
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 2.4e-14 82.8 102 51.0
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 2.4e-14 82.8 102 51.0
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 3.1e-14 82.4 91 51.6
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 4.1e-14 82.0 102 51.0
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 7.0e-14 81.3 102 47.1
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 9.2e-14 80.9 95 46.3
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 1.2e-13 80.5 102 49.0
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 1.6e-13 80.1 102 49.0
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 1.6e-13 80.1 102 46.1
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 1.6e-13 80.1 102 46.1
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 2.0e-13 79.7 103 52.4
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 2.7e-13 79.3 103 52.4
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 2.7e-13 79.3 91 49.5
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 2.7e-13 79.3 91 47.3
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 2.7e-13 79.3 102 46.1
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 3.5e-13 79.0 91 48.4
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 4.5e-13 78.6 93 53.8
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 4.5e-13 78.6 102 48.0
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 4.5e-13 78.6 102 46.1
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 5.9e-13 78.2 91 48.4
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 5.9e-13 78.2 102 48.0
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 5.9e-13 78.2 102 48.0
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 5.9e-13 78.2 92 51.1
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 5.9e-13 78.2 101 43.6
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 7.8e-13 77.8 103 48.5
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 7.8e-13 77.8 103 48.5
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 1.0e-12 77.4 103 49.5
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 1.3e-12 77.0 90 47.8
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 1.7e-12 76.6 102 47.1
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 1.7e-12 76.6 97 45.4
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 1.7e-12 76.6 105 49.5
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 2.3e-12 76.3 93 48.4
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 2.9e-12 75.9 92 50.0
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 5.0e-12 75.1 91 45.1
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 6.6e-12 74.7 98 43.9
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 6.6e-12 74.7 103 48.5
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 1.1e-11 73.9 95 49.5
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 1.1e-11 73.9 91 46.2
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 3.3e-11 72.4 105 41.0
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 4.3e-11 72.0 97 43.3
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 2.1e-10 69.7 93 48.4
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 2.1e-10 69.7 91 44.0
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 2.1e-10 69.7 91 44.0
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 2.8e-10 69.3 93 45.2
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 4.7e-10 68.6 93 45.2
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 6.1e-10 68.2 74 51.4
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 6.1e-10 68.2 92 51.1
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 6.1e-10 68.2 92 50.0
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 1.4e-09 67.0 109 43.1
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 1.8e-09 66.6 92 47.8
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 4.0e-09 65.5 95 48.4
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 4.0e-09 65.5 97 43.3
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 4.0e-09 65.5 91 45.1
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 8.9e-09 64.3 91 44.0
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 1.2e-08 63.9 102 44.1
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 1.2e-08 63.9 100 42.0
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 1.2e-08 63.9 94 44.7
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 1.2e-08 63.9 123 38.2
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.5e-08 63.5 102 40.2
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 2.0e-08 63.2 106 42.5
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 2.6e-08 62.8 95 42.1
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 7.5e-08 61.2 98 45.9
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 7.5e-08 61.2 113 42.5
FAN25G2302 Fragaria x ananassa HOM05D000283 ORTHO05D000358 4.9e-07 58.5 70 55.7
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 8.3e-07 57.8 92 43.5
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 2.4e-06 56.2 99 41.4
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 2.4e-06 56.2 91 41.8
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 4.1e-06 55.5 94 43.6


User provided reference genes

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