Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050464 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 2.3e-96 355.5 177 100.0
CSS0037656 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 1.4e-72 276.6 177 83.6
CSS0034688 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 3.1e-72 275.4 203 75.9
CSS0049897 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 4.4e-71 271.6 177 83.1
CSS0002158 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 1.7e-59 233.0 174 70.7
CSS0005225 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.0e-44 181.4 226 50.0
CSS0020284 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.0e-40 167.5 215 48.8
CSS0047175 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-38 163.3 209 49.3
CSS0040737 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.6e-31 137.9 168 44.0
CSS0040816 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.2e-29 132.1 84 81.0
CSS0008768 Camellia sinensis var. sinensis HOM05D010459 ORTHO05D004756 2.1e-28 129.8 210 36.2
CSS0043144 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004756 2.1e-28 129.8 81 80.2
CSS0049081 Camellia sinensis var. sinensis HOM05D010459 ORTHO05D004756 2.8e-25 119.4 179 40.2
CSS0016560 Camellia sinensis var. sinensis HOM05D010459 ORTHO05D004756 4.0e-24 115.5 95 60.0
CSS0047750 Camellia sinensis var. sinensis HOM05D010459 ORTHO05D004756 4.0e-24 115.5 95 60.0
CSS0046673 Camellia sinensis var. sinensis HOM05D010459 ORTHO05D004756 9.0e-24 114.4 95 58.9
CSS0047076 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004756 1.0e-22 110.9 68 85.3
PSO782G2577 Papaver somniferum HOM05D000002 ORTHO05D004756 6.5e-22 108.2 204 31.4
SHI49499 Sapria himalayana HOM05D000002 ORTHO05D000001 6.5e-22 108.2 206 31.1
CSS0011907 Camellia sinensis var. sinensis HOM05D010459 ORTHO05D004756 9.3e-21 104.4 100 53.0
CSS0047049 Camellia sinensis var. sinensis HOM05D010459 ORTHO05D004756 9.3e-21 104.4 100 53.0
Ca_20123_v3 Cicer arietinum L. HOM05D007230 ORTHO05D004756 1.2e-20 104.0 165 33.9
COL.COLO4_36632 Corchorus olitorius HOM05D000002 ORTHO05D004756 1.6e-20 103.6 232 30.2
COL.COLO4_20910 Corchorus olitorius HOM05D000002 ORTHO05D004756 6.7e-19 98.2 96 50.0
SHI02112 Sapria himalayana HOM05D000002 ORTHO05D000001 3.3e-18 95.9 89 51.7
SHI05604 Sapria himalayana HOM05D000002 ORTHO05D000001 5.7e-18 95.1 89 50.6
SHI09402 Sapria himalayana HOM05D007230 ORTHO05D004756 5.7e-18 95.1 89 50.6
COL.COLO4_28935 Corchorus olitorius HOM05D007230 ORTHO05D004756 1.3e-17 94.0 97 48.5
SHI04462 Sapria himalayana HOM05D000002 ORTHO05D004756 1.3e-17 94.0 89 49.4
SHI32448 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-17 94.0 86 51.2
SHI36897 Sapria himalayana HOM05D000002 ORTHO05D004756 1.3e-17 94.0 89 49.4
SHI17244 Sapria himalayana HOM05D007230 ORTHO05D004756 1.6e-17 93.6 89 49.4
CSS0046298 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004756 2.8e-17 92.8 95 51.6
SHI47374 Sapria himalayana HOM05D000002 ORTHO05D000001 2.8e-17 92.8 89 50.6
SHI28040 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-17 92.0 89 48.3
SHI41657 Sapria himalayana HOM05D000002 ORTHO05D004756 4.8e-17 92.0 89 48.3
vmacro05503 Vaccinium macrocarpon HOM05D002996 ORTHO05D004756 4.8e-17 92.0 88 53.4
Potri.013G133550 Populus trichocarpa HOM05D010459 ORTHO05D004756 6.2e-17 91.7 77 59.7
SHI02527 Sapria himalayana HOM05D007230 ORTHO05D004756 6.2e-17 91.7 89 48.3
SHI03432 Sapria himalayana HOM05D007230 ORTHO05D004756 6.2e-17 91.7 89 49.4
SHI39742 Sapria himalayana HOM05D000002 ORTHO05D000001 6.2e-17 91.7 92 47.8
SHI06223 Sapria himalayana HOM05D000002 ORTHO05D000001 8.2e-17 91.3 89 47.2
SHI16498 Sapria himalayana HOM05D000002 ORTHO05D000001 8.2e-17 91.3 89 49.4
SHI30744 Sapria himalayana HOM05D000002 ORTHO05D004756 8.2e-17 91.3 137 37.2
SHI18717 Sapria himalayana HOM05D007230 ORTHO05D004756 1.8e-16 90.1 89 47.2
SHI02490 Sapria himalayana HOM05D000002 ORTHO05D000001 2.4e-16 89.7 86 50.0
SHI11549 Sapria himalayana HOM05D000002 ORTHO05D000001 6.9e-16 88.2 86 48.8
Ca_07474_v3 Cicer arietinum L. HOM05D007230 ORTHO05D004756 9.0e-16 87.8 79 54.4
MD02G1156200 Malus domestica HOM05D000002 ORTHO05D004756 9.0e-16 87.8 95 46.3
SHI45992 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-15 87.4 86 48.8
SHI40782 Sapria himalayana HOM05D000002 ORTHO05D000001 2.0e-15 86.7 176 31.2
TPR.G24908 Trifolium pratense HOM05D000030 ORTHO05D000031 4.5e-15 85.5 98 44.9
SHI26640 Sapria himalayana HOM05D007230 ORTHO05D004756 1.0e-14 84.3 86 46.5
Aqoxy5G03695 Aquilegia oxysepala HOM05D000002 ORTHO05D004756 3.8e-14 82.4 201 27.4
CSS0018470 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004756 5.0e-14 82.0 78 57.7
SHI11999 Sapria himalayana HOM05D000002 ORTHO05D000001 8.4e-14 81.3 77 53.2
SHI12633 Sapria himalayana HOM05D000002 ORTHO05D004756 1.1e-13 80.9 77 50.6
SHI24644 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-13 80.9 78 51.3
SHI45862 Sapria himalayana HOM05D007230 ORTHO05D004756 1.1e-13 80.9 77 50.6
CSS0050399 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004756 1.4e-13 80.5 52 78.8
SHI29623 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-13 80.1 83 47.0
SHI31302 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-13 80.1 77 50.6
PSO675G6160 Papaver somniferum HOM05D000002 ORTHO05D004756 2.5e-13 79.7 107 38.3
SHI03218 Sapria himalayana HOM05D007230 ORTHO05D004756 2.5e-13 79.7 77 50.6
SHI15740 Sapria himalayana HOM05D000002 ORTHO05D000001 2.5e-13 79.7 77 51.9
SHI36442 Sapria himalayana HOM05D000002 ORTHO05D000001 2.5e-13 79.7 77 50.6
SHI54737 Sapria himalayana HOM05D000002 ORTHO05D000001 2.5e-13 79.7 77 50.6
PSO017G2245 Papaver somniferum HOM05D000002 ORTHO05D000001 3.2e-13 79.3 83 44.6
PSO675G0495 Papaver somniferum HOM05D007230 ORTHO05D004756 5.5e-13 78.6 81 46.9
PSO754G0013 Papaver somniferum HOM05D007230 ORTHO05D004756 5.5e-13 78.6 173 29.5
SHI11692 Sapria himalayana HOM05D000002 ORTHO05D000001 5.5e-13 78.6 77 49.4
SHI20212 Sapria himalayana HOM05D000002 ORTHO05D000001 5.5e-13 78.6 77 50.6
PSO144G0017 Papaver somniferum HOM05D007230 ORTHO05D004756 7.2e-13 78.2 86 43.0
Rhsim07G0087400 Rhododendron simsii HOM05D007230 ORTHO05D004756 7.2e-13 78.2 98 42.9
CSS0024569 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 9.3e-13 77.8 84 47.6
Rhsim11G0068500 Rhododendron simsii HOM05D007230 ORTHO05D004756 9.3e-13 77.8 93 44.1
CSS0016168 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 2.1e-12 76.6 84 46.4
CSS0042753 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 2.1e-12 76.6 84 46.4
CSS0043112 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 2.1e-12 76.6 84 46.4
Rhsim01G0194900 Rhododendron simsii HOM05D007230 ORTHO05D004756 2.1e-12 76.6 92 44.6
SHI35844 Sapria himalayana HOM05D000002 ORTHO05D000001 2.7e-12 76.3 74 51.4
Ca_27664_v3 Cicer arietinum L. HOM05D000002 ORTHO05D004756 3.5e-12 75.9 74 44.6
Rhsim04G0054200 Rhododendron simsii HOM05D007230 ORTHO05D004756 4.6e-12 75.5 108 39.8
Rhsim11G0119100 Rhododendron simsii HOM05D007230 ORTHO05D004756 4.6e-12 75.5 93 43.0
SHI09801 Sapria himalayana HOM05D007230 ORTHO05D004756 4.6e-12 75.5 77 48.1
CSS0021358 Camellia sinensis var. sinensis HOM05D010459 ORTHO05D004756 6.1e-12 75.1 70 61.4
PSO063G0989 Papaver somniferum HOM05D007230 ORTHO05D004756 1.3e-11 73.9 83 38.6
Hma1.2p1_1655F.1_g295950 Hydrangea macrophylla HOM05D007230 ORTHO05D004756 1.8e-11 73.6 84 45.2
PSO832G0254 Papaver somniferum HOM05D007230 ORTHO05D004756 3.0e-11 72.8 150 31.3
Psat1g072080 Pisum sativum HOM05D007230 ORTHO05D004756 3.0e-11 72.8 124 34.7
TPR.G39545 Trifolium pratense HOM05D007230 ORTHO05D004756 3.0e-11 72.8 69 55.1
TWI59G1050 Tripterygium wilfordii HOM05D012930 ORTHO05D004756 3.0e-11 72.8 119 31.1
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 3.9e-11 72.4 103 41.7
Manes.14G134321 Manihot esculenta HOM05D007230 ORTHO05D004756 3.9e-11 72.4 82 42.7
Rhsim04G0107400 Rhododendron simsii HOM05D007230 ORTHO05D004756 3.9e-11 72.4 84 42.9
TWI59G1424 Tripterygium wilfordii HOM05D012930 ORTHO05D004756 3.9e-11 72.4 120 31.7
TWI73G0658 Tripterygium wilfordii HOM05D012930 ORTHO05D004756 6.7e-11 71.6 120 31.7
QL05p073015 Quercus lobata HOM05D000002 ORTHO05D000001 8.7e-11 71.2 95 37.9
PSO339G5468 Papaver somniferum HOM05D007230 ORTHO05D004756 2.5e-10 69.7 89 41.6
TWI12G0087 Tripterygium wilfordii HOM05D012930 ORTHO05D004756 3.3e-10 69.3 87 39.1
TWI12G0354 Tripterygium wilfordii HOM05D012930 ORTHO05D004756 3.3e-10 69.3 87 39.1
TWI12G0323 Tripterygium wilfordii HOM05D012930 ORTHO05D004756 4.3e-10 68.9 87 39.1
TWI14G0706 Tripterygium wilfordii HOM05D012930 ORTHO05D004756 4.3e-10 68.9 87 39.1
TWI38G1548 Tripterygium wilfordii HOM05D012930 ORTHO05D004756 4.3e-10 68.9 87 39.1
TWI73G1000 Tripterygium wilfordii HOM05D012930 ORTHO05D004756 4.3e-10 68.9 87 39.1
TWI75G1724 Tripterygium wilfordii HOM05D012930 ORTHO05D004756 4.3e-10 68.9 87 39.1
SHI50483 Sapria himalayana HOM05D000002 ORTHO05D000001 7.4e-10 68.2 102 37.3
TWI77G0375 Tripterygium wilfordii HOM05D012930 ORTHO05D004756 7.4e-10 68.2 86 39.5
TWI73G0803 Tripterygium wilfordii HOM05D007230 ORTHO05D004756 9.7e-10 67.8 83 41.0
Rhsim11G0089400 Rhododendron simsii HOM05D007230 ORTHO05D004756 1.3e-09 67.4 86 43.0
TPR.G13973 Trifolium pratense HOM05D007230 ORTHO05D004756 1.6e-09 67.0 76 47.4
QL02p084387 Quercus lobata HOM05D000002 ORTHO05D000001 2.2e-09 66.6 95 36.8
PSO170G3518 Papaver somniferum HOM05D007230 ORTHO05D004756 2.8e-09 66.2 71 42.3
QL01p026368 Quercus lobata HOM05D000002 ORTHO05D000001 3.7e-09 65.9 95 36.8
QL02p069342 Quercus lobata HOM05D000002 ORTHO05D000001 3.7e-09 65.9 84 40.5
QL03p000720 Quercus lobata HOM05D000002 ORTHO05D000001 3.7e-09 65.9 96 36.5
QL04p089373 Quercus lobata HOM05D000002 ORTHO05D000001 3.7e-09 65.9 95 36.8
QL06p036226 Quercus lobata HOM05D000002 ORTHO05D000001 3.7e-09 65.9 95 36.8
QL04p097278 Quercus lobata HOM05D000002 ORTHO05D000001 4.8e-09 65.5 84 40.5
QL08p048522 Quercus lobata HOM05D000002 ORTHO05D000001 4.8e-09 65.5 84 40.5
QL10p052423 Quercus lobata HOM05D000002 ORTHO05D000001 4.8e-09 65.5 84 40.5
QL11p016059 Quercus lobata HOM05D000002 ORTHO05D000001 4.8e-09 65.5 84 40.5
Ca_02897_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 8.2e-09 64.7 70 47.1
QL11p048818 Quercus lobata HOM05D000002 ORTHO05D000001 8.2e-09 64.7 128 30.5
QL09p018296 Quercus lobata HOM05D000002 ORTHO05D000001 1.4e-08 63.9 84 39.3
QL11p002299 Quercus lobata HOM05D000002 ORTHO05D000001 2.4e-08 63.2 95 35.8
QL04p092122 Quercus lobata HOM05D000002 ORTHO05D000001 3.1e-08 62.8 84 39.3
CSS0029026 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.1e-08 62.4 35 82.9
SHI53716 Sapria himalayana HOM05D000002 ORTHO05D000001 4.1e-08 62.4 57 54.4
Actinidia05629 Actinidia chinensis HOM05D007230 ORTHO05D004756 6.9e-08 61.6 55 54.5
Psat5g096840 Pisum sativum HOM05D007230 ORTHO05D004756 9.0e-08 61.2 80 37.5
SHI31374 Sapria himalayana HOM05D000002 ORTHO05D000001 9.0e-08 61.2 53 56.6
CSS0010076 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-07 60.8 32 87.5
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.2e-07 60.8 140 29.3
Psat0ss2585g0560 Pisum sativum HOM05D007230 ORTHO05D004756 1.5e-07 60.5 80 36.2
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 1.5e-07 60.5 104 37.5
vmacro04005 Vaccinium macrocarpon HOM05D006655 ORTHO05D007986 1.5e-07 60.5 52 59.6
CSS0010225 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-07 60.1 42 69.0
CSS0013612 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-07 60.1 42 69.0
CSS0033338 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-07 60.1 42 69.0
Psat1g026880 Pisum sativum HOM05D007230 ORTHO05D004756 2.0e-07 60.1 80 35.0
Psat5g083840 Pisum sativum HOM05D007230 ORTHO05D004756 2.0e-07 60.1 80 35.0
Psat7g056280 Pisum sativum HOM05D007230 ORTHO05D004756 2.0e-07 60.1 80 35.0
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 2.0e-07 60.1 109 33.0
FvH4_2g03582 Fragaria vesca HOM05D000002 ORTHO05D000047 2.6e-07 59.7 99 36.4
PSO063G3207 Papaver somniferum HOM05D007908 ORTHO05D009653 2.6e-07 59.7 114 32.5
Rhsim05G0139800 Rhododendron simsii HOM05D007230 ORTHO05D004756 2.6e-07 59.7 137 32.8
CSS0034909 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.4e-07 59.3 32 87.5
PGR083G0359 Punica granatum HOM05D000002 ORTHO05D000047 3.4e-07 59.3 159 26.4
AUR62041521 Chenopodium quinoa HOM05D000002 ORTHO05D000047 4.5e-07 58.9 108 31.5
AUR62043299 Chenopodium quinoa HOM05D000002 ORTHO05D000047 4.5e-07 58.9 108 31.5
COL.COLO4_09335 Corchorus olitorius HOM05D007230 ORTHO05D004756 4.5e-07 58.9 85 35.3
Hma1.2p1_1409F.1_g281700 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 4.5e-07 58.9 143 26.6
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 1.0e-06 57.8 108 29.6
Rhsim13G0148200 Rhododendron simsii HOM05D007908 ORTHO05D009653 1.0e-06 57.8 108 29.6
RhsimUnG0057000 Rhododendron simsii HOM05D007908 ORTHO05D009653 1.0e-06 57.8 108 29.6
RhsimUnG0157400 Rhododendron simsii HOM05D007908 ORTHO05D009653 1.0e-06 57.8 108 29.6
CSS0010001 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-06 57.4 39 71.8
CANSAT78G1626 Cannabis sativa HOM05D000002 ORTHO05D000047 1.3e-06 57.4 101 28.7
FvH4_3g04761 Fragaria vesca HOM05D000002 ORTHO05D000047 1.3e-06 57.4 106 34.9
FvH4_6g02393 Fragaria vesca HOM05D000002 ORTHO05D000001 1.3e-06 57.4 106 34.9
CSS0050438 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-06 57.0 35 77.1
Sabra18G0086500 Salix brachista HOM05D007230 ORTHO05D004756 1.7e-06 57.0 80 33.8
CSS0020992 Camellia sinensis var. sinensis HOM05D024225 ORTHO05D000001 2.2e-06 56.6 31 80.6
CiPaw.07G046700 Carya illinoinensis HOM05D007908 ORTHO05D009653 2.9e-06 56.2 88 34.1
Psat2g117040 Pisum sativum HOM05D007230 ORTHO05D004756 2.9e-06 56.2 163 25.8
CSS0016191 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.8e-06 55.8 31 83.9
CANSAT56G0197 Cannabis sativa HOM05D000002 ORTHO05D000047 3.8e-06 55.8 84 29.8
HanXRQChr11g0320751 Helianthus annuus HOM05D000002 ORTHO05D000001 3.8e-06 55.8 128 27.3
Hma1.2p1_0827F.1_g225000 Hydrangea macrophylla HOM05D007230 ORTHO05D004756 5.0e-06 55.5 63 38.1
Medtr5g075690 Medicago truncatula HOM05D004391 ORTHO05D005193 5.0e-06 55.5 101 36.6
Psat6g173880 Pisum sativum HOM05D010459 ORTHO05D004756 5.0e-06 55.5 55 49.1
TWI63G1752 Tripterygium wilfordii HOM05D012930 ORTHO05D004756 5.0e-06 55.5 73 37.0
TWI77G1008 Tripterygium wilfordii HOM05D007908 ORTHO05D009653 5.0e-06 55.5 86 37.2
CSS0048984 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.5e-06 55.1 61 47.5
CANSAT11G1776 Cannabis sativa HOM05D000002 ORTHO05D000047 6.5e-06 55.1 98 27.6
TPR.G9895 Trifolium pratense HOM05D007908 ORTHO05D009653 6.5e-06 55.1 102 33.3
MELO3C030315.2 Cucumis melo HOM05D007230 ORTHO05D004756 8.5e-06 54.7 84 34.5
FvH4_4g14844 Fragaria vesca HOM05D000002 ORTHO05D000047 8.5e-06 54.7 88 37.5
HanXRQChr04g0127061 Helianthus annuus HOM05D000002 ORTHO05D000001 8.5e-06 54.7 114 32.5
Hma1.2p1_1137F.1_g260710 Hydrangea macrophylla HOM05D007908 ORTHO05D009653 8.5e-06 54.7 138 29.0
MD04G1051300 Malus domestica HOM05D000002 ORTHO05D000001 8.5e-06 54.7 105 33.3
TWI74G1046 Tripterygium wilfordii HOM05D012930 ORTHO05D004756 8.5e-06 54.7 72 33.3


User provided reference genes

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