Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050453 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 9.9e-97 356.7 168 100.0
CSS0028931 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.4e-95 352.1 168 98.2
CSS0031502 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.3e-93 345.5 168 97.0
CSS0000454 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.9e-92 342.4 168 95.8
CSS0050092 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 4.2e-87 324.7 167 91.6
CSS0004487 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 3.1e-74 282.0 167 82.6
CSS0033656 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.4e-71 273.1 168 81.0
CSS0044724 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 8.4e-64 247.3 167 75.4
CSS0016678 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 6.1e-62 241.1 167 73.1
CSS0024873 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.9e-60 236.1 167 72.5
Rhsim10G0191400 Rhododendron simsii HOM05D000649 ORTHO05D000513 1.5e-28 130.2 78 74.4
vmacro20607 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 3.1e-26 122.5 82 65.9
TAR628G0170 Trochodendron aralioides HOM05D000649 ORTHO05D000513 1.5e-23 113.6 97 55.7
Cpa.g.sc26.10 Carica papaya HOM05D000649 ORTHO05D000513 9.4e-23 110.9 90 52.2
Nn5g31051 Nelumbo nucifera HOM05D000649 ORTHO05D000513 1.2e-22 110.5 81 61.7
Actinidia22858 Actinidia chinensis HOM05D000649 ORTHO05D000513 6.1e-22 108.2 79 65.8
TAR381G0051 Trochodendron aralioides HOM05D000649 ORTHO05D000513 1.4e-21 107.1 97 50.5
Hma1.2p1_0085F.1_g044350 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 1.8e-21 106.7 78 59.0
Manes.05G127900 Manihot esculenta HOM05D000649 ORTHO05D000513 5.2e-21 105.1 85 55.3
TAR376G0834 Trochodendron aralioides HOM05D000649 ORTHO05D000513 8.8e-21 104.4 78 57.7
Potri.002G004600 Populus trichocarpa HOM05D000649 ORTHO05D000513 1.2e-20 104.0 100 50.0
Atru.chr13.58 Acer truncatum HOM05D000649 ORTHO05D000513 1.5e-20 103.6 88 53.4
Hma1.2p1_0699F.1_g205730 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 2.0e-20 103.2 85 52.9
Prupe.5G005300 Prunus persica HOM05D000649 ORTHO05D000513 2.6e-20 102.8 105 46.7
CiPaw.07G133300 Carya illinoinensis HOM05D000649 ORTHO05D000513 5.7e-20 101.7 78 55.1
AL2G36600 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 1.3e-19 100.5 100 45.0
Aqoxy6G02997 Aquilegia oxysepala HOM05D000649 ORTHO05D000513 2.2e-19 99.8 86 54.7
CARHR070020 Cardamine hirsuta HOM05D000649 ORTHO05D000513 2.8e-19 99.4 93 47.3
THA.LOC104813737 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 4.9e-19 98.6 81 49.4
Nitab4.5_0010897g0010 Nicotiana tabacum HOM05D000649 ORTHO05D000513 6.3e-19 98.2 78 55.1
Sabra02G0003100 Salix brachista HOM05D000649 ORTHO05D000513 6.3e-19 98.2 100 47.0
PGSC0003DMG400009999 Solanum tuberosum HOM05D000649 ORTHO05D000513 6.3e-19 98.2 97 47.4
Actinidia17079 Actinidia chinensis HOM05D000649 ORTHO05D000513 8.3e-19 97.8 78 55.1
Carub.0002s2338 Capsella rubella HOM05D000649 ORTHO05D000513 8.3e-19 97.8 93 46.2
Sopen04g036410 Solanum pennellii HOM05D000649 ORTHO05D000513 8.3e-19 97.8 85 50.6
Haze_22865 Corylus avellana HOM05D000649 ORTHO05D000513 1.1e-18 97.4 78 52.6
Thhalv10018983m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 1.1e-18 97.4 93 46.2
Glyma.06G014300 Glycine max HOM05D000649 ORTHO05D000513 1.1e-18 97.4 81 51.9
Nn6g31618 Nelumbo nucifera HOM05D000649 ORTHO05D000513 1.1e-18 97.4 81 55.6
PSO675G8806 Papaver somniferum HOM05D000649 ORTHO05D000513 1.1e-18 97.4 140 37.9
CSS0025109 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D000513 1.4e-18 97.1 78 53.8
Cfa014139 Carpinus fangiana HOM05D001065 ORTHO05D000513 1.4e-18 97.1 111 44.1
Sp5g31630 Schrenkiella parvula HOM05D000649 ORTHO05D000513 1.4e-18 97.1 116 42.2
A07p42130 Brassica napus HOM05D000649 ORTHO05D000513 1.8e-18 96.7 93 47.3
Cc10_g00240 Coffea canephora HOM05D000649 ORTHO05D000513 1.8e-18 96.7 97 44.3
Lalb_Chr08g0246551 Lupinus albus HOM05D000649 ORTHO05D000513 1.8e-18 96.7 88 46.6
AT1G76460 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 2.4e-18 96.3 93 46.2
Ca_04244_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 2.4e-18 96.3 102 45.1
Ca_15383_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 2.4e-18 96.3 102 45.1
VMungo1309G1435 Vigna mungo HOM05D000649 ORTHO05D000513 2.4e-18 96.3 81 50.6
arahy.Tifrunner.gnm1.ann1.T7FLND Arachis hypogaea HOM05D000649 ORTHO05D000513 3.1e-18 95.9 129 41.9
Dinv13765 Davidia involucrata HOM05D000649 ORTHO05D000513 3.1e-18 95.9 78 53.8
Eucgr.J02558 Eucalyptus grandis HOM05D000649 ORTHO05D000513 3.1e-18 95.9 81 51.9
Lalb_Chr23g0265501 Lupinus albus HOM05D000649 ORTHO05D000513 5.4e-18 95.1 74 52.7
THA.LOC104812008 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 5.4e-18 95.1 93 44.1
CiPaw.08G077300 Carya illinoinensis HOM05D000649 ORTHO05D000513 7.0e-18 94.7 96 44.8
Manes.18G001800 Manihot esculenta HOM05D000649 ORTHO05D000513 9.2e-18 94.4 76 56.6
PSO541G2048 Papaver somniferum HOM05D000649 ORTHO05D000513 9.2e-18 94.4 140 36.4
Prupe.7G186900 Prunus persica HOM05D000649 ORTHO05D000513 9.2e-18 94.4 77 53.2
MBI01_g28406_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 1.2e-17 94.0 107 48.6
TWI36G1513 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 1.2e-17 94.0 78 53.8
Lj2C505G3 Lonicera japonica HOM05D000649 ORTHO05D000513 1.6e-17 93.6 85 50.6
Rhsim06G0003000 Rhododendron simsii HOM05D000649 ORTHO05D000513 1.6e-17 93.6 77 53.2
Actinidia15526 Actinidia chinensis HOM05D000649 ORTHO05D000513 2.0e-17 93.2 78 52.6
Lalb_Chr11g0061361 Lupinus albus HOM05D000649 ORTHO05D000513 2.0e-17 93.2 81 49.4
MD06G1004000 Malus domestica HOM05D000649 ORTHO05D000513 2.0e-17 93.2 79 50.6
Psat5g008440 Pisum sativum HOM05D000649 ORTHO05D000513 2.0e-17 93.2 85 48.2
FAN23G1151 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.7e-17 92.8 82 50.0
FAN26G0796 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.7e-17 92.8 82 50.0
Glyma.04G014300 Glycine max HOM05D000649 ORTHO05D000513 2.7e-17 92.8 82 51.2
Lj1g0016936 Lotus japonicus HOM05D000649 ORTHO05D000513 2.7e-17 92.8 88 45.5
Medtr3g116130 Medicago truncatula HOM05D000649 ORTHO05D000513 3.5e-17 92.4 103 44.7
Potri.005G256700 Populus trichocarpa HOM05D000649 ORTHO05D000513 3.5e-17 92.4 100 43.0
Sabra05G0198800 Salix brachista HOM05D000649 ORTHO05D000513 3.5e-17 92.4 79 51.9
BcaC08g47242 Brassica carinata HOM05D000649 ORTHO05D000513 5.9e-17 91.7 93 45.2
C06p50700 Brassica napus HOM05D000649 ORTHO05D000513 5.9e-17 91.7 93 45.2
BolC6t40096H Brassica oleracea HOM05D000649 ORTHO05D000513 5.9e-17 91.7 93 45.2
FvH4_1g09990 Fragaria vesca HOM05D000649 ORTHO05D000513 5.9e-17 91.7 85 49.4
FAN23G2635 Fragaria x ananassa HOM05D000649 ORTHO05D000513 5.9e-17 91.7 82 50.0
QL02p015755 Quercus lobata HOM05D000649 ORTHO05D000513 5.9e-17 91.7 74 52.7
Sc26g0004760 Simmondsia chinensis HOM05D000649 ORTHO05D000513 5.9e-17 91.7 80 48.8
COL.COLO4_12296 Corchorus olitorius HOM05D000649 ORTHO05D000513 1.0e-16 90.9 78 48.7
Thecc.08G099600 Theobroma cacao HOM05D000649 ORTHO05D000513 1.3e-16 90.5 81 46.9
BcaC08g47153 Brassica carinata HOM05D000649 ORTHO05D000513 1.7e-16 90.1 93 44.1
Dinv05494 Davidia involucrata HOM05D000649 ORTHO05D000513 1.7e-16 90.1 78 47.4
Phvul.009G008600 Phaseolus vulgaris HOM05D000649 ORTHO05D000513 1.7e-16 90.1 81 49.4
Gohir.D01G086900 Gossypium hirsutum HOM05D000649 ORTHO05D000513 2.3e-16 89.7 103 43.7
Gorai.002G112500 Gossypium raimondii HOM05D000649 ORTHO05D000513 2.3e-16 89.7 103 43.7
RcHm_v2.0_Chr2g0096781 Rosa chinensis HOM05D000649 ORTHO05D000513 2.3e-16 89.7 85 48.2
TWI56G0525 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 2.3e-16 89.7 78 52.6
Gohir.A01G101800 Gossypium hirsutum HOM05D000649 ORTHO05D000513 2.9e-16 89.4 104 44.2
Aa31LG4G6550 Aethionema arabicum HOM05D000649 ORTHO05D000513 3.8e-16 89.0 94 43.6
DCAR_016799 Daucus carota HOM05D000649 ORTHO05D000513 3.8e-16 89.0 75 54.7
Duzib116G0655 Durio zibethinus HOM05D000649 ORTHO05D000513 3.8e-16 89.0 84 45.2
BraA07t31742Z Brassica rapa HOM05D000649 ORTHO05D000513 5.0e-16 88.6 93 44.1
Ciclev10003364m.g Citrus clementina HOM05D000649 ORTHO05D000513 5.0e-16 88.6 77 49.4
MD00G1148300 Malus domestica HOM05D000649 ORTHO05D000513 6.6e-16 88.2 80 47.5
TWI12G0980 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 6.6e-16 88.2 78 51.3
Aa31LG7G5040 Aethionema arabicum HOM05D000649 ORTHO05D000513 1.9e-15 86.7 122 39.3
FAN28G0025 Fragaria x ananassa HOM05D000649 ORTHO05D000513 1.9e-15 86.7 100 44.0
PGR083G0393 Punica granatum HOM05D000649 ORTHO05D000513 3.3e-15 85.9 98 45.9
Duzib093G1313 Durio zibethinus HOM05D000649 ORTHO05D000513 4.3e-15 85.5 80 48.8
arahy.Tifrunner.gnm1.ann1.63TST2 Arachis hypogaea HOM05D000649 ORTHO05D000513 5.6e-15 85.1 130 40.0
ClCG08G009160 Citrullus lanatus HOM05D000649 ORTHO05D000513 7.3e-15 84.7 78 48.7
TPR.G38167 Trifolium pratense HOM05D000649 ORTHO05D000513 7.3e-15 84.7 72 51.4
vmacro21765 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 7.3e-15 84.7 79 50.6
SalBow6G0043 Salvia bowleyana HOM05D000649 ORTHO05D000513 9.5e-15 84.3 80 45.0
DCAR_013943 Daucus carota HOM05D000649 ORTHO05D014141 1.2e-14 84.0 80 48.8
Eucgr.I02201 Eucalyptus grandis HOM05D000649 ORTHO05D000513 1.6e-14 83.6 85 45.9
HanXRQChr16g0532161 Helianthus annuus HOM05D000649 ORTHO05D000513 1.6e-14 83.6 91 42.9
MELO3C026514.2 Cucumis melo HOM05D000649 ORTHO05D000513 2.8e-14 82.8 78 47.4
CsaV3_6G035960 Cucumis sativus L. HOM05D000649 ORTHO05D000513 2.8e-14 82.8 78 47.4
Migut.N02989 Erythranthe guttata HOM05D000649 ORTHO05D000513 2.8e-14 82.8 80 42.5
Oeu039086.1 Olea europaea HOM05D000649 ORTHO05D014141 2.8e-14 82.8 71 50.7
SGA_v2.0_scaffold220G42643 Striga asiatica HOM05D000649 ORTHO05D000513 2.8e-14 82.8 94 38.3
Thhalv10008444m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 3.6e-14 82.4 115 40.0
ECA246G2133 Erigeron canadensis HOM05D000649 ORTHO05D000513 6.1e-14 81.6 91 40.7
MD15G1228000 Malus domestica HOM05D000649 ORTHO05D000513 8.0e-14 81.3 73 50.7
PSO017G1691 Papaver somniferum HOM05D000649 ORTHO05D000513 8.0e-14 81.3 78 48.7
CDE05G1430 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 1.8e-13 80.1 67 46.3
Sed0009990 Sechium edule HOM05D000649 ORTHO05D000513 1.8e-13 80.1 78 44.9
PSO170G5065 Papaver somniferum HOM05D000649 ORTHO05D000513 2.3e-13 79.7 78 47.4
Oeu042506.1 Olea europaea HOM05D000649 ORTHO05D000513 3.0e-13 79.3 96 38.5
MSTRG.24518 Avicennia marina HOM05D000649 ORTHO05D000513 4.0e-13 79.0 87 37.9
HanXRQChr09g0241921 Helianthus annuus HOM05D000649 ORTHO05D000513 4.0e-13 79.0 78 48.7
Eucgr.F03603 Eucalyptus grandis HOM05D000649 ORTHO05D000513 5.2e-13 78.6 85 47.1
ATR0605G253 Amborella trichopoda HOM05D000649 ORTHO05D000513 6.8e-13 78.2 70 45.7
AL1G33900 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 6.8e-13 78.2 116 37.9
Oeu030360.2 Olea europaea HOM05D000649 ORTHO05D000513 6.8e-13 78.2 73 49.3
AT1G20880 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 8.9e-13 77.8 74 48.6
MD02G1108800 Malus domestica HOM05D000649 ORTHO05D000513 8.9e-13 77.8 73 47.9
ECA232G1614 Erigeron canadensis HOM05D000649 ORTHO05D000513 1.2e-12 77.4 78 50.0
CANSAT25G2852 Cannabis sativa HOM05D000649 ORTHO05D000513 2.0e-12 76.6 78 43.6
RcHm_v2.0_Chr7g0216701 Rosa chinensis HOM05D000649 ORTHO05D000513 2.0e-12 76.6 81 45.7
ECA238G0875 Erigeron canadensis HOM05D000649 ORTHO05D000513 2.6e-12 76.3 117 35.0
AUR62035172 Chenopodium quinoa HOM05D000649 ORTHO05D000513 4.4e-12 75.5 101 39.6
Lj4C242G3 Lonicera japonica HOM05D000649 ORTHO05D000513 4.4e-12 75.5 78 43.6
MBI04_g31210_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 4.4e-12 75.5 52 57.7
unitig_578.g16241 Utricularia gibba HOM05D000649 ORTHO05D000513 4.4e-12 75.5 80 42.5
Cc07_g12210 Coffea canephora HOM05D000649 ORTHO05D000513 5.7e-12 75.1 72 50.0
Manes.02G116700 Manihot esculenta HOM05D000649 ORTHO05D000513 7.5e-12 74.7 80 46.2
MSTRG.22081 Avicennia marina HOM05D000649 ORTHO05D000513 9.8e-12 74.3 99 40.4
Carub.0001s2035 Capsella rubella HOM05D000649 ORTHO05D000513 9.8e-12 74.3 108 36.1
Ciclev10026337m.g Citrus clementina HOM05D000649 ORTHO05D000513 9.8e-12 74.3 80 40.0
Sed0025783 Sechium edule HOM05D000649 ORTHO05D000513 9.8e-12 74.3 93 39.8
DCAR_009860 Daucus carota HOM05D000649 ORTHO05D000513 1.3e-11 73.9 82 45.1
FAN18G2507 Fragaria x ananassa HOM05D000649 ORTHO05D000513 1.3e-11 73.9 152 31.6
CDE05G1023 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 2.9e-11 72.8 67 43.3
Oeu013568.1 Olea europaea HOM05D000649 ORTHO05D000513 2.9e-11 72.8 71 43.7
BraA08t34853Z Brassica rapa HOM05D000649 ORTHO05D000513 4.9e-11 72.0 97 39.2
PGR031G0467 Punica granatum HOM05D000649 ORTHO05D000513 1.8e-10 70.1 92 35.9
BcaB03g14296 Brassica carinata HOM05D000649 ORTHO05D000513 2.4e-10 69.7 99 38.4
FAN04G1603 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.4e-10 69.7 91 38.5
FAN08G0068 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.4e-10 69.7 93 39.8
Lsat_1_v5_gn_9_48300 Lactuca sativa HOM05D000649 ORTHO05D000513 2.4e-10 69.7 84 46.4
SEGI_17423 Sequoiadendron giganteum HOM05D000649 ORTHO05D000513 2.4e-10 69.7 71 40.8
unitig_8.g4815 Utricularia gibba HOM05D000649 ORTHO05D000513 5.4e-10 68.6 71 39.4
FAN13G1717 Fragaria x ananassa HOM05D000649 ORTHO05D000513 7.0e-10 68.2 83 41.0
Lj4A240G32 Lonicera japonica HOM05D000649 ORTHO05D000513 7.0e-10 68.2 70 44.3
FvH4_5g26080 Fragaria vesca HOM05D000649 ORTHO05D000513 9.2e-10 67.8 83 41.0
Hma1.2p1_0711F.1_g207530 Hydrangea macrophylla HOM05D000649 ORTHO05D014141 9.2e-10 67.8 61 49.2
CARHR021310 Cardamine hirsuta HOM05D000649 ORTHO05D000513 4.6e-09 65.5 95 40.0
Eucgr.F01820 Eucalyptus grandis HOM05D000649 ORTHO05D000513 4.6e-09 65.5 81 39.5
HPP92_020532 Vanilla planifolia HOM05D000649 ORTHO05D014141 7.8e-09 64.7 65 38.5
BcaB07g32083 Brassica carinata HOM05D000649 ORTHO05D000513 1.7e-08 63.5 97 35.1
SGA_v2.0_scaffold227G43163 Striga asiatica HOM05D000649 ORTHO05D000513 1.7e-08 63.5 94 33.0
BcaC07g39059 Brassica carinata HOM05D000649 ORTHO05D000513 2.3e-08 63.2 80 37.5
C08p20430 Brassica napus HOM05D000649 ORTHO05D000513 6.6e-08 61.6 80 36.2
BolC8t49672H Brassica oleracea HOM05D000649 ORTHO05D000513 6.6e-08 61.6 80 36.2
BcaC06g34844 Brassica carinata HOM05D000649 ORTHO05D000513 8.6e-08 61.2 80 38.8
C07p22740 Brassica napus HOM05D000649 ORTHO05D000513 8.6e-08 61.2 80 38.8
BolC7t42806H Brassica oleracea HOM05D000649 ORTHO05D000513 8.6e-08 61.2 80 38.8
Lsat_1_v5_gn_3_69020 Lactuca sativa HOM05D000649 ORTHO05D000513 8.6e-08 61.2 92 39.1
A07p15430 Brassica napus HOM05D000649 ORTHO05D000513 2.5e-07 59.7 80 38.8
BraA07t29282Z Brassica rapa HOM05D000649 ORTHO05D000513 2.5e-07 59.7 80 38.8
Os02g0714000 Oryza sativa ssp. japonica HOM05D000649 ORTHO05D000513 2.5e-07 59.7 126 31.0
A08p29180 Brassica napus HOM05D000649 ORTHO05D000513 1.2e-06 57.4 95 35.8
Haze_12233 Corylus avellana HOM05D000740 ORTHO05D003236 1.6e-06 57.0 44 68.2
Nitab4.5_0007250g0010 Nicotiana tabacum HOM05D000649 ORTHO05D000513 3.6e-06 55.8 67 41.8
Zm00001eb388030 Zea mays HOM05D000649 ORTHO05D000513 3.6e-06 55.8 96 32.3
Dinv15246 Davidia involucrata HOM05D000740 ORTHO05D003236 8.0e-06 54.7 38 73.7


User provided reference genes

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