Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 6.1e-82 307.4 149 100.0
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 5.6e-43 177.9 117 75.2
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 1.3e-39 166.8 121 71.1
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 2.7e-37 159.1 140 62.1
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 1.0e-36 157.1 105 73.3
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 6.2e-34 147.9 117 59.8
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.1e-33 147.1 115 67.8
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.1e-33 147.1 115 67.8
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 2.4e-33 146.0 117 65.0
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 4.0e-33 145.2 117 61.5
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 5.2e-33 144.8 116 64.7
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 1.2e-32 143.7 117 64.1
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 1.5e-32 143.3 117 64.1
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 3.4e-32 142.1 117 63.2
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 4.4e-32 141.7 117 59.8
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 5.8e-32 141.4 117 60.7
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 1.3e-31 140.2 116 61.2
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 1.3e-31 140.2 115 64.3
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 3.8e-31 138.7 117 61.5
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 4.9e-31 138.3 117 61.5
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 6.4e-31 137.9 128 58.6
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 1.9e-30 136.3 117 65.0
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 4.1e-30 135.2 117 55.6
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 4.1e-30 135.2 117 55.6
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 5.4e-30 134.8 117 57.3
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 5.4e-30 134.8 117 55.6
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 5.4e-30 134.8 117 62.4
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 7.1e-30 134.4 117 57.3
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 7.1e-30 134.4 116 58.6
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 9.2e-30 134.0 115 59.1
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 1.2e-29 133.7 117 59.0
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 1.2e-29 133.7 117 57.3
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 1.2e-29 133.7 117 61.5
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 1.6e-29 133.3 115 60.9
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.1e-29 132.9 117 56.4
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.7e-29 132.5 118 57.6
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 2.7e-29 132.5 119 58.0
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 2.7e-29 132.5 149 51.0
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 4.6e-29 131.7 117 57.3
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 7.8e-29 131.0 118 57.6
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.7e-28 129.8 118 56.8
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 2.3e-28 129.4 128 55.5
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 6.6e-28 127.9 117 54.7
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 8.7e-28 127.5 118 56.8
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 8.7e-28 127.5 115 55.7
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 1.5e-27 126.7 115 55.7
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 1.9e-27 126.3 127 50.4
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 2.8e-26 122.5 116 53.4
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 2.8e-26 122.5 126 55.6
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 2.8e-26 122.5 126 55.6
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 2.8e-26 122.5 126 55.6
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 6.2e-26 121.3 117 54.7
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 5.2e-25 118.2 117 51.3
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 6.9e-25 117.9 119 47.9
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 1.5e-24 116.7 146 47.9
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 5.8e-24 114.8 120 54.2
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 5.8e-24 114.8 117 53.0
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 7.6e-24 114.4 114 51.8
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 7.6e-24 114.4 117 55.6
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 9.9e-24 114.0 118 52.5
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 1.7e-23 113.2 98 61.2
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 2.2e-23 112.8 118 52.5
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 4.9e-23 111.7 117 48.7
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 8.4e-23 110.9 117 52.1
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 1.1e-22 110.5 117 54.7
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 1.4e-22 110.2 145 44.1
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 1.4e-22 110.2 105 57.1
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 1.4e-22 110.2 99 57.6
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 1.9e-22 109.8 136 45.6
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 4.2e-22 108.6 116 50.9
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 1.6e-21 106.7 126 43.7
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 3.0e-20 102.4 67 77.6
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 1.5e-19 100.1 118 44.1
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 1.5e-19 100.1 118 44.1
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.5e-19 100.1 117 49.6
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 1.9e-19 99.8 118 44.1
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 3.3e-19 99.0 118 44.1
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 2.8e-18 95.9 117 41.9
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 6.2e-18 94.7 120 44.2
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 2.4e-17 92.8 118 43.2
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 2.4e-17 92.8 102 51.0
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 9.0e-17 90.9 121 38.0
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 1.2e-16 90.5 118 41.5
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 1.5e-16 90.1 98 45.9
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 3.4e-16 89.0 117 39.3
PSO210G7616 Papaver somniferum HOM05D006554 ORTHO05D008778 4.5e-16 88.6 101 47.5
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 5.8e-16 88.2 119 39.5
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 5.8e-16 88.2 118 37.3
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 1.3e-15 87.0 118 39.8
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 4.9e-15 85.1 119 38.7
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 6.4e-15 84.7 118 43.2
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 1.4e-14 83.6 155 34.8
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 1.9e-14 83.2 121 38.8
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 1.9e-14 83.2 122 36.9
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 4.2e-14 82.0 151 37.1
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 2.7e-13 79.3 140 35.0
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 2.7e-13 79.3 122 38.5
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 3.5e-13 79.0 140 34.3
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 4.6e-13 78.6 117 37.6
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 6.0e-13 78.2 118 39.8
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 1.3e-12 77.0 117 38.5
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 1.8e-12 76.6 117 37.6
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 3.0e-12 75.9 126 41.3
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 2.5e-11 72.8 143 32.2
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 5.6e-11 71.6 143 32.2
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 7.4e-11 71.2 117 39.3
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 4.0e-09 65.5 92 39.1
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 5.3e-09 65.1 101 37.6
ClCG09G020540 Citrullus lanatus HOM05D000336 ORTHO05D002705 9.0e-09 64.3 116 30.2
MELO3C002885.2 Cucumis melo HOM05D000336 ORTHO05D002705 1.5e-08 63.5 116 29.3
CsaV3_5G025830 Cucumis sativus L. HOM05D000336 ORTHO05D002705 1.5e-08 63.5 116 29.3
Medtr2g437500 Medicago truncatula HOM05D000336 ORTHO05D002705 2.0e-08 63.2 102 34.3
SalBow3G1252 Salvia bowleyana HOM05D000336 ORTHO05D002705 2.6e-08 62.8 101 35.6
Lj2g0014987 Lotus japonicus HOM05D000336 ORTHO05D002705 5.8e-08 61.6 101 32.7
Phvul.004G074600 Phaseolus vulgaris HOM05D000336 ORTHO05D002705 5.8e-08 61.6 101 33.7
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 9.9e-08 60.8 56 51.8
SEGI_39566 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 9.9e-08 60.8 101 34.7
Ciclev10015942m.g Citrus clementina HOM05D000336 ORTHO05D002705 1.3e-07 60.5 98 33.7
MSTRG.4151 Avicennia marina HOM05D000336 ORTHO05D002705 2.2e-07 59.7 101 31.7
Manes.07G103100 Manihot esculenta HOM05D000336 ORTHO05D002705 2.2e-07 59.7 101 32.7
Nitab4.5_0005460g0050 Nicotiana tabacum HOM05D000336 ORTHO05D002705 2.2e-07 59.7 101 31.7
Sabra10G0169200 Salix brachista HOM05D000336 ORTHO05D002705 2.2e-07 59.7 116 28.4
Migut.F01763 Erythranthe guttata HOM05D000336 ORTHO05D002705 3.8e-07 58.9 101 31.7
MBI02_g34318_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002705 3.8e-07 58.9 101 31.7
Nitab4.5_0000233g0240 Nicotiana tabacum HOM05D000336 ORTHO05D002705 3.8e-07 58.9 101 31.7
Peaxi162Scf00108g00148 Petunia axillaris HOM05D000336 ORTHO05D002705 3.8e-07 58.9 101 31.7
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 4.9e-07 58.5 75 49.3
TAR633G1495 Trochodendron aralioides HOM05D000336 ORTHO05D002705 4.9e-07 58.5 104 31.7
Aqoxy4G03225 Aquilegia oxysepala HOM05D000336 ORTHO05D002705 6.4e-07 58.2 101 30.7
CANSAT54G2317 Cannabis sativa HOM05D000336 ORTHO05D002705 6.4e-07 58.2 101 30.7
CAN.G220.42 Capsicum annuum HOM05D000336 ORTHO05D002705 6.4e-07 58.2 101 31.7
CANSAT54G1049 Cannabis sativa HOM05D000336 ORTHO05D002705 8.4e-07 57.8 101 30.7
unitig_748.g8305 Utricularia gibba HOM05D000336 ORTHO05D002705 8.4e-07 57.8 128 31.2
VMungo0464G0405 Vigna mungo HOM05D000336 ORTHO05D002705 8.4e-07 57.8 101 32.7
Aqoxy2G01232 Aquilegia oxysepala HOM05D000336 ORTHO05D002705 1.1e-06 57.4 101 31.7
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.1e-06 57.4 75 49.3
Potri.008G043000 Populus trichocarpa HOM05D000336 ORTHO05D002705 1.1e-06 57.4 101 30.7
Prupe.2G216800 Prunus persica HOM05D000336 ORTHO05D002705 1.1e-06 57.4 101 30.7
Sc05g0003330 Simmondsia chinensis HOM05D000336 ORTHO05D002705 1.1e-06 57.4 101 31.7
TWI60G1326 Tripterygium wilfordii HOM05D000336 ORTHO05D002705 1.1e-06 57.4 98 28.6
Atru.chr10.202 Acer truncatum HOM05D000336 ORTHO05D002705 1.4e-06 57.0 98 30.6
Manes.03G072850 Manihot esculenta HOM05D000336 ORTHO05D002705 1.4e-06 57.0 98 32.7
Medtr6g033375 Medicago truncatula HOM05D000336 ORTHO05D002705 1.4e-06 57.0 101 32.7
Sed0006647 Sechium edule HOM05D000336 ORTHO05D002705 1.4e-06 57.0 101 29.7
PSO384G0900 Papaver somniferum HOM05D000336 ORTHO05D002705 1.9e-06 56.6 98 31.6
Thecc.10G069700 Theobroma cacao HOM05D000336 ORTHO05D002705 1.9e-06 56.6 101 32.7
Gohir.A12G051100 Gossypium hirsutum HOM05D000336 ORTHO05D002705 2.4e-06 56.2 98 32.7
CiPaw.01G275200 Carya illinoinensis HOM05D000336 ORTHO05D002705 3.2e-06 55.8 114 30.7
Cc03_g05840 Coffea canephora HOM05D000336 ORTHO05D002705 3.2e-06 55.8 98 32.7
Eucgr.F03145 Eucalyptus grandis HOM05D000336 ORTHO05D002705 3.2e-06 55.8 101 30.7
Gohir.D12G049300 Gossypium hirsutum HOM05D000336 ORTHO05D002705 3.2e-06 55.8 98 32.7
Gorai.008G052200 Gossypium raimondii HOM05D000336 ORTHO05D002705 3.2e-06 55.8 98 32.7
QL08p056651 Quercus lobata HOM05D000336 ORTHO05D002705 3.2e-06 55.8 116 27.6
RcHm_v2.0_Chr1g0363941 Rosa chinensis HOM05D000336 ORTHO05D002705 3.2e-06 55.8 101 30.7
Solyc09g090370.3 Solanum lycopersicum HOM05D000336 ORTHO05D002705 3.2e-06 55.8 101 30.7
Sopen09g009860 Solanum pennellii HOM05D000336 ORTHO05D002705 3.2e-06 55.8 101 29.7
Sopen09g033280 Solanum pennellii HOM05D000336 ORTHO05D002705 3.2e-06 55.8 101 30.7
SGA_v2.0_scaffold341G49354 Striga asiatica HOM05D000336 ORTHO05D002705 3.2e-06 55.8 101 29.7
MD01G1111300 Malus domestica HOM05D000336 ORTHO05D002705 4.2e-06 55.5 101 29.7
Potri.010G219200 Populus trichocarpa HOM05D000336 ORTHO05D002705 4.2e-06 55.5 100 31.0
Rhsim04G0175400 Rhododendron simsii HOM05D000336 ORTHO05D002705 4.2e-06 55.5 101 31.7
Sed0016055 Sechium edule HOM05D000336 ORTHO05D002705 4.2e-06 55.5 100 31.0
TAR636G0998 Trochodendron aralioides HOM05D000336 ORTHO05D002705 4.2e-06 55.5 101 30.7
GSVIVG01034328001 Vitis vinifera HOM05D000336 ORTHO05D002705 4.2e-06 55.5 101 29.7
Haze_16925 Corylus avellana HOM05D000336 ORTHO05D002705 5.5e-06 55.1 101 29.7
Medtr8g070660 Medicago truncatula HOM05D000336 ORTHO05D002705 5.5e-06 55.1 81 34.6
PGSC0003DMG400017209 Solanum tuberosum HOM05D000336 ORTHO05D002705 5.5e-06 55.1 101 29.7
FAN10G2878 Fragaria x ananassa HOM05D000336 ORTHO05D002705 7.1e-06 54.7 101 29.7
Lj6C625G11 Lonicera japonica HOM05D000336 ORTHO05D002705 7.1e-06 54.7 101 28.7
Lj6C626G9 Lonicera japonica HOM05D000336 ORTHO05D002705 7.1e-06 54.7 101 28.7
PSO339G5251 Papaver somniferum HOM05D000336 ORTHO05D002705 7.1e-06 54.7 98 30.6
PGR044G0317 Punica granatum HOM05D000336 ORTHO05D002705 7.1e-06 54.7 114 29.8
Thecc.02G000600 Theobroma cacao HOM05D000336 ORTHO05D002705 7.1e-06 54.7 98 31.6
unitig_32.g10850 Utricularia gibba HOM05D000336 ORTHO05D002705 7.1e-06 54.7 117 29.9
AT2G34900 Arabidopsis thaliana HOM05D000336 ORTHO05D002705 9.3e-06 54.3 124 26.6
Duzib248G0328 Durio zibethinus HOM05D000336 ORTHO05D002705 9.3e-06 54.3 98 30.6
FvH4_7g19980 Fragaria vesca HOM05D000336 ORTHO05D002705 9.3e-06 54.3 101 29.7
FAN01G0523 Fragaria x ananassa HOM05D000336 ORTHO05D002705 9.3e-06 54.3 101 28.7
FAN01G2774 Fragaria x ananassa HOM05D000336 ORTHO05D002705 9.3e-06 54.3 101 28.7
FAN03G1721 Fragaria x ananassa HOM05D000336 ORTHO05D002705 9.3e-06 54.3 101 29.7
FAN06G4785 Fragaria x ananassa HOM05D000336 ORTHO05D002705 9.3e-06 54.3 101 29.7
HanXRQChr15g0496731 Helianthus annuus HOM05D000336 ORTHO05D002705 9.3e-06 54.3 101 29.7
Peaxi162Scf00602g00315 Petunia axillaris HOM05D000336 ORTHO05D002705 9.3e-06 54.3 101 29.7
Pp3c19_8020 Physcomitrium patens HOM05D000336 ORTHO05D002705 9.3e-06 54.3 68 41.2


User provided reference genes

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