Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 9.0e-108 393.7 208 100.0
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 1.0e-90 337.0 198 85.9
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 5.0e-90 334.7 198 84.8
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 8.5e-90 334.0 195 87.7
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 3.2e-89 332.0 198 84.3
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 1.6e-88 329.7 198 83.8
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 4.7e-88 328.2 195 82.6
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 8.0e-88 327.4 198 83.3
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 8.0e-88 327.4 198 83.3
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 1.0e-87 327.0 198 82.8
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 1.0e-87 327.0 198 83.8
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 2.3e-87 325.9 198 82.3
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 3.0e-87 325.5 198 82.8
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 3.9e-87 325.1 198 80.8
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 5.2e-87 324.7 191 84.3
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 6.7e-87 324.3 195 83.6
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 2.0e-86 322.8 198 81.8
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 3.3e-86 322.0 195 83.6
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 3.3e-86 322.0 197 80.7
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 9.7e-86 320.5 198 82.3
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 9.7e-86 320.5 196 82.1
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 9.7e-86 320.5 198 80.8
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 2.2e-85 319.3 201 80.1
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 3.7e-85 318.5 198 82.8
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 3.7e-85 318.5 198 81.3
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 4.8e-85 318.2 198 82.3
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 4.8e-85 318.2 198 79.8
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 8.2e-85 317.4 198 78.8
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 8.2e-85 317.4 198 80.3
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 1.1e-84 317.0 198 79.3
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 1.1e-84 317.0 198 79.3
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 1.1e-84 317.0 198 80.8
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 1.8e-84 316.2 196 80.6
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 1.8e-84 316.2 196 79.1
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 2.4e-84 315.8 198 78.3
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 2.4e-84 315.8 192 83.3
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 2.4e-84 315.8 198 79.3
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 4.1e-84 315.1 191 82.2
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 4.1e-84 315.1 195 78.5
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 5.3e-84 314.7 198 79.3
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 5.3e-84 314.7 191 82.2
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 9.1e-84 313.9 192 81.2
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 1.2e-83 313.5 198 78.3
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 2.0e-83 312.8 192 82.8
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 2.6e-83 312.4 196 79.6
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 2.6e-83 312.4 198 78.3
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 4.5e-83 311.6 196 79.1
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 4.5e-83 311.6 198 77.3
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 5.9e-83 311.2 198 77.3
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 5.9e-83 311.2 196 80.6
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 5.9e-83 311.2 196 79.1
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 5.9e-83 311.2 198 77.8
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 1.0e-82 310.5 196 79.6
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 1.0e-82 310.5 196 79.6
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 1.0e-82 310.5 198 77.8
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 1.3e-82 310.1 193 79.8
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 2.9e-82 308.9 198 77.8
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 5.0e-82 308.1 196 78.1
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 8.5e-82 307.4 189 80.4
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 1.1e-81 307.0 196 79.1
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 1.1e-81 307.0 196 79.1
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 1.5e-81 306.6 198 75.8
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 1.9e-81 306.2 198 77.3
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 2.5e-81 305.8 193 78.8
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 4.2e-81 305.1 193 78.2
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 5.5e-81 304.7 199 77.9
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 1.2e-80 303.5 198 76.8
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 2.7e-80 302.4 239 68.2
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 3.6e-80 302.0 196 78.6
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 3.6e-80 302.0 196 78.6
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 4.7e-80 301.6 198 75.3
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 4.7e-80 301.6 198 77.3
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 6.1e-80 301.2 198 77.3
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 8.0e-80 300.8 198 74.7
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 1.4e-79 300.1 196 76.0
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 1.8e-79 299.7 196 76.0
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 2.3e-79 299.3 198 74.2
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 4.0e-79 298.5 193 78.2
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 6.7e-79 297.7 196 77.6
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 1.2e-78 297.0 188 79.8
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 1.2e-78 297.0 198 76.3
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 1.5e-78 296.6 193 77.7
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 1.5e-78 296.6 196 76.0
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 7.5e-78 294.3 197 76.6
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 1.3e-77 293.5 195 73.8
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 1.3e-77 293.5 199 75.9
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 1.7e-77 293.1 175 82.9
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 4.8e-77 291.6 193 75.6
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 6.3e-77 291.2 198 74.7
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 8.2e-77 290.8 198 72.7
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 1.8e-76 289.7 172 83.7
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 5.3e-76 288.1 198 74.2
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 1.0e-74 283.9 174 79.9
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 1.7e-74 283.1 197 71.6
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 3.8e-74 282.0 198 73.2
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 2.1e-72 276.2 198 72.7
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 2.7e-72 275.8 198 72.7
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 2.0e-70 269.6 170 78.8
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 8.3e-69 264.2 172 76.7
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 2.4e-68 262.7 193 67.9
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 5.4e-68 261.5 198 64.1
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 7.7e-67 257.7 229 59.8
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 3.8e-66 255.4 158 78.5
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.1e-65 253.8 194 65.5
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 3.6e-64 248.8 198 63.6
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 6.3e-61 238.0 189 60.3
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 4.5e-59 231.9 187 59.4
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 1.0e-58 230.7 187 58.8
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 1.9e-57 226.5 194 55.7
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 3.1e-55 219.2 150 73.3
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 2.4e-52 209.5 195 53.8
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 6.6e-50 201.4 143 67.1
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 1.9e-33 146.7 110 68.2
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 3.3e-33 146.0 177 46.3
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 1.2e-30 137.5 180 47.8
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 3.2e-20 102.8 78 64.1
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 5.3e-15 85.5 60 73.3
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.5e-14 84.0 60 70.0
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 3.2e-12 76.3 50 76.0
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 1.3e-08 64.3 108 45.4
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 2.4e-07 60.1 43 65.1


User provided reference genes

Program Settings