Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050430 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 7.8e-65 250.4 132 100.0
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.2e-25 120.2 134 60.4
Manes.04G034400 Manihot esculenta HOM05D005967 ORTHO05D005174 8.2e-22 107.5 142 50.0
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 1.4e-21 106.7 130 49.2
Dinv12413 Davidia involucrata HOM05D005967 ORTHO05D005174 7.7e-20 100.9 139 52.5
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 2.2e-19 99.4 140 49.3
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 6.5e-19 97.8 137 49.6
Dinv16991 Davidia involucrata HOM05D005967 ORTHO05D005174 4.2e-18 95.1 135 52.6
Dinv42940 Davidia involucrata HOM05D005967 ORTHO05D005174 4.2e-18 95.1 135 52.6
Dinv43160 Davidia involucrata HOM05D005967 ORTHO05D005174 4.2e-18 95.1 135 52.6
QL01p032269 Quercus lobata HOM05D005967 ORTHO05D005174 4.2e-18 95.1 148 46.6
Duzib168G1635 Durio zibethinus HOM05D005967 ORTHO05D005174 1.2e-17 93.6 147 42.9
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 1.6e-17 93.2 131 48.1
CiPaw.13G095300 Carya illinoinensis HOM05D005967 ORTHO05D005174 8.0e-17 90.9 156 41.0
TAR623G0987 Trochodendron aralioides HOM05D005967 ORTHO05D005174 1.8e-16 89.7 143 46.9
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 3.0e-16 89.0 108 50.0
Duzib170G1125 Durio zibethinus HOM05D005967 ORTHO05D005174 3.9e-16 88.6 153 44.4
CiPaw.14G068900 Carya illinoinensis HOM05D005967 ORTHO05D005174 5.2e-16 88.2 147 42.9
Duzib150G1094 Durio zibethinus HOM05D005967 ORTHO05D005174 5.2e-16 88.2 148 42.6
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 1.1e-15 87.0 108 49.1
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 1.5e-15 86.7 131 46.6
TWI31G0692 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 2.0e-15 86.3 101 54.5
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 3.3e-15 85.5 121 46.3
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 7.4e-15 84.3 124 44.4
Ciclev10029478m.g Citrus clementina HOM05D005967 ORTHO05D005174 1.3e-14 83.6 140 40.0
Sabra09G0021100 Salix brachista HOM05D005967 ORTHO05D005174 1.3e-14 83.6 70 65.7
Manes.09G089000 Manihot esculenta HOM05D005967 ORTHO05D005174 2.2e-14 82.8 144 45.8
Dinv37179 Davidia involucrata HOM05D005967 ORTHO05D005174 3.7e-14 82.0 140 43.6
Gohir.A03G037600 Gossypium hirsutum HOM05D005967 ORTHO05D005174 6.3e-14 81.3 141 43.3
CANSAT54G2543 Cannabis sativa HOM05D005967 ORTHO05D005174 8.2e-14 80.9 76 59.2
Oeu007791.1 Olea europaea HOM05D005967 ORTHO05D005174 1.8e-13 79.7 137 40.1
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 1.8e-13 79.7 120 45.8
Duzib106G1613 Durio zibethinus HOM05D005967 ORTHO05D005174 4.1e-13 78.6 154 38.3
Sabra16G0144100 Salix brachista HOM05D005967 ORTHO05D005174 5.3e-13 78.2 139 45.3
Gorai.003G132600 Gossypium raimondii HOM05D005967 ORTHO05D005174 9.1e-13 77.4 81 54.3
Nn5g26925 Nelumbo nucifera HOM05D005967 ORTHO05D005174 1.2e-12 77.0 156 42.3
COL.COLO4_18500 Corchorus olitorius HOM05D005967 ORTHO05D005174 1.6e-12 76.6 161 39.8
Oeu024352.1 Olea europaea HOM05D005967 ORTHO05D005174 1.6e-12 76.6 115 41.7
Actinidia23945 Actinidia chinensis HOM05D005967 ORTHO05D005174 3.5e-12 75.5 70 48.6
Nn2g10378 Nelumbo nucifera HOM05D005967 ORTHO05D005174 3.5e-12 75.5 98 50.0
Thecc.05G040600 Theobroma cacao HOM05D005967 ORTHO05D005174 3.5e-12 75.5 150 41.3
Hma1.2p1_1513F.1_g288050 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 4.5e-12 75.1 137 40.9
Atru.chr3.3892 Acer truncatum HOM05D005967 ORTHO05D005174 7.7e-12 74.3 96 51.0
Thecc.09G322800 Theobroma cacao HOM05D005967 ORTHO05D005174 1.0e-11 73.9 126 39.7
TWI79G0544 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 1.3e-11 73.6 163 38.7
Prupe.6G078900 Prunus persica HOM05D005967 ORTHO05D005174 1.7e-11 73.2 154 37.7
Rhsim01G0227100 Rhododendron simsii HOM05D005967 ORTHO05D005174 2.2e-11 72.8 138 42.0
CsaV3_1G034090 Cucumis sativus L. HOM05D005967 ORTHO05D005174 3.8e-11 72.0 110 49.1
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.8e-11 72.0 97 47.4
Gohir.D03G126300 Gossypium hirsutum HOM05D005967 ORTHO05D005174 5.0e-11 71.6 78 52.6
MELO3C020645.2 Cucumis melo HOM05D005967 ORTHO05D005174 6.5e-11 71.2 131 44.3
Sed0015612 Sechium edule HOM05D005967 ORTHO05D005174 1.1e-10 70.5 82 56.1
TAR636G2062 Trochodendron aralioides HOM05D000645 ORTHO05D000494 1.9e-10 69.7 120 44.2
Aqoxy4G02913 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 3.2e-10 68.9 93 46.2
MD03G1095400 Malus domestica HOM05D005967 ORTHO05D005174 4.2e-10 68.6 154 36.4
MD11G1110400 Malus domestica HOM05D005967 ORTHO05D005174 4.2e-10 68.6 157 36.3
Prupe.6G254000 Prunus persica HOM05D005967 ORTHO05D005174 4.2e-10 68.6 131 34.4
Duzib093G0486 Durio zibethinus HOM05D005967 ORTHO05D005174 5.5e-10 68.2 74 55.4
AL6G11650 Arabidopsis lyrata HOM05D010528 ORTHO05D005174 7.2e-10 67.8 102 44.1
DCAR_005325 Daucus carota HOM05D005967 ORTHO05D005174 7.2e-10 67.8 132 40.2
AT5G02420 Arabidopsis thaliana HOM05D010528 ORTHO05D005174 9.4e-10 67.4 102 44.1
Cpa.g.sc81.161 Carica papaya HOM05D005967 ORTHO05D005174 9.4e-10 67.4 98 46.9
Thhalv10015059m.g Eutrema salsugineum HOM05D010528 ORTHO05D005174 1.2e-09 67.0 81 53.1
Gohir.D04G121000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.2e-09 67.0 127 37.8
Gorai.012G103600 Gossypium raimondii HOM05D005967 ORTHO05D005174 1.2e-09 67.0 127 37.8
ClCG03G001590 Citrullus lanatus HOM05D005967 ORTHO05D005174 1.6e-09 66.6 72 55.6
Carub.0006s0121 Capsella rubella HOM05D010528 ORTHO05D005174 2.7e-09 65.9 81 50.6
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.7e-09 65.9 97 45.4
FAN16G3022 Fragaria x ananassa HOM05D005967 ORTHO05D005174 6.1e-09 64.7 136 43.4
FAN21G3710 Fragaria x ananassa HOM05D005967 ORTHO05D005174 6.1e-09 64.7 136 43.4
Oeu036150.1 Olea europaea HOM05D005967 ORTHO05D005174 6.1e-09 64.7 110 40.0
Eucgr.A01260 Eucalyptus grandis HOM05D005967 ORTHO05D005174 8.0e-09 64.3 120 37.5
Eucgr.B02374 Eucalyptus grandis HOM05D005967 ORTHO05D005174 8.0e-09 64.3 98 45.9
Potri.006G084700 Populus trichocarpa HOM05D005967 ORTHO05D005174 8.0e-09 64.3 128 40.6
CSS0050426 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 1.0e-08 63.9 130 38.5
FvH4_3g35950 Fragaria vesca HOM05D005967 ORTHO05D005174 1.0e-08 63.9 136 40.4
Oeu011403.1 Olea europaea HOM05D005967 ORTHO05D005174 1.0e-08 63.9 134 35.1
CARHR210990 Cardamine hirsuta HOM05D010528 ORTHO05D005174 1.4e-08 63.5 76 50.0
FAN11G1916 Fragaria x ananassa HOM05D005967 ORTHO05D005174 1.4e-08 63.5 136 40.4
THA.LOC104827013 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 1.4e-08 63.5 108 38.0
Migut.J00334 Erythranthe guttata HOM05D005967 ORTHO05D005174 1.8e-08 63.2 120 42.5
Oeu036152.1 Olea europaea HOM05D005967 ORTHO05D005174 1.8e-08 63.2 95 41.1
Gohir.A01G222700 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.3e-08 62.8 79 48.1
Hma1.2p1_1829F.1_g304460 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 2.3e-08 62.8 113 40.7
Cfa017389 Carpinus fangiana HOM05D005967 ORTHO05D005174 5.2e-08 61.6 87 41.4
DCAR_005974 Daucus carota HOM05D005967 ORTHO05D005174 6.7e-08 61.2 131 38.2
FAN25G3118 Fragaria x ananassa HOM05D005967 ORTHO05D005174 6.7e-08 61.2 136 41.9
Gohir.A04G082200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 8.8e-08 60.8 76 46.1
A03p00680 Brassica napus HOM05D010528 ORTHO05D005174 1.5e-07 60.1 107 39.3
A03p00720 Brassica napus HOM05D010528 ORTHO05D005174 1.5e-07 60.1 107 39.3
C03p00950 Brassica napus HOM05D010528 ORTHO05D005174 1.5e-07 60.1 107 39.3
BolC3t12657H Brassica oleracea HOM05D010528 ORTHO05D005174 1.5e-07 60.1 107 39.3
BraA03t09457Z Brassica rapa HOM05D010528 ORTHO05D005174 1.5e-07 60.1 107 39.3
DCAR_020849 Daucus carota HOM05D005967 ORTHO05D005174 2.0e-07 59.7 102 45.1
RcHm_v2.0_Chr5g0064301 Rosa chinensis HOM05D005967 ORTHO05D005174 2.0e-07 59.7 110 40.9
Sabra06G0064300 Salix brachista HOM05D000729 ORTHO05D001063 2.0e-07 59.7 127 40.2
MSTRG.5669 Avicennia marina HOM05D005967 ORTHO05D005174 2.6e-07 59.3 102 39.2
Aa31LG1G22380 Aethionema arabicum HOM05D010528 ORTHO05D005174 3.3e-07 58.9 82 45.1
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 3.3e-07 58.9 133 35.3
Oeu019207.1 Olea europaea HOM05D005967 ORTHO05D005174 3.3e-07 58.9 109 40.4
Lj3g0001714 Lotus japonicus HOM05D005967 ORTHO05D005174 5.7e-07 58.2 94 46.8
Oeu038352.1 Olea europaea HOM05D005967 ORTHO05D005174 5.7e-07 58.2 124 37.1
Peaxi162Scf00679g00042 Petunia axillaris HOM05D005967 ORTHO05D014046 9.7e-07 57.4 128 35.2
CAN.G530.11 Capsicum annuum HOM05D016316 ORTHO05D018871 1.3e-06 57.0 75 45.3
Atru.chr8.1967 Acer truncatum HOM05D005967 ORTHO05D005174 1.7e-06 56.6 128 39.8
CiPaw.09G192100 Carya illinoinensis HOM05D005967 ORTHO05D005174 1.7e-06 56.6 91 44.0
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 1.7e-06 56.6 111 38.7
TPR.G14476 Trifolium pratense HOM05D005967 ORTHO05D005174 2.2e-06 56.2 113 40.7
Oeu054156.1 Olea europaea HOM05D005967 ORTHO05D005174 2.8e-06 55.8 94 42.6
Phvul.L004943 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 3.7e-06 55.5 104 35.6
Psat0s8791g0040 Pisum sativum HOM05D005967 ORTHO05D005174 3.7e-06 55.5 115 42.6
THA.LOC104823258 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 3.7e-06 55.5 71 40.8
VMungo1080G1048 Vigna mungo HOM05D005967 ORTHO05D005174 3.7e-06 55.5 61 45.9
C09p74150 Brassica napus HOM05D010528 ORTHO05D005174 4.8e-06 55.1 72 45.8
BolC9t60147H Brassica oleracea HOM05D010528 ORTHO05D005174 4.8e-06 55.1 72 45.8
Glyma.15G038800 Glycine max HOM05D005967 ORTHO05D005174 8.2e-06 54.3 57 49.1


User provided reference genes

Program Settings