Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050424 Camellia sinensis var. sinensis HOM05D004467 ORTHO05D004918 1.7e-210 735.7 375 100.0
CSS0045223 Camellia sinensis var. sinensis HOM05D004467 ORTHO05D004918 1.5e-201 706.1 375 96.5
Rhsim05G0042300 Rhododendron simsii HOM05D004467 ORTHO05D004918 3.1e-130 469.2 341 72.4
Actinidia09440 Actinidia chinensis HOM05D004467 ORTHO05D004918 3.4e-129 465.7 339 72.3
Actinidia20407 Actinidia chinensis HOM05D004467 ORTHO05D004918 2.4e-127 459.5 376 66.8
vmacro10868 Vaccinium macrocarpon HOM05D004467 ORTHO05D004918 6.8e-122 441.4 375 63.7
CSS0030226 Camellia sinensis var. sinensis HOM05D004467 ORTHO05D004918 2.3e-109 399.8 364 62.9
Atru.chr7.1422 Acer truncatum HOM05D004467 ORTHO05D004918 5.2e-106 388.7 356 60.4
Cfa003215 Carpinus fangiana HOM05D004467 ORTHO05D004918 9.9e-105 384.4 339 61.9
MD15G1193100 Malus domestica HOM05D004467 ORTHO05D004918 9.3e-103 377.9 339 61.1
Haze_25793 Corylus avellana HOM05D004467 ORTHO05D004918 3.5e-102 375.9 339 61.1
Lj7C659T11 Lonicera japonica HOM05D004467 ORTHO05D004918 1.6e-99 367.1 363 60.3
Dinv41649 Davidia involucrata HOM05D004467 ORTHO05D004918 3.6e-99 365.9 353 58.6
Prupe.7G224200 Prunus persica HOM05D004467 ORTHO05D004918 4.8e-99 365.5 339 60.2
COL.COLO4_34790 Corchorus olitorius HOM05D004467 ORTHO05D004918 6.2e-99 365.2 353 56.4
QL02p042959 Quercus lobata HOM05D004467 ORTHO05D004918 2.4e-98 363.2 338 60.4
QL02p042682 Quercus lobata HOM05D004467 ORTHO05D004918 5.3e-98 362.1 338 60.4
Ciclev10008049m.g Citrus clementina HOM05D004467 ORTHO05D004918 2.0e-97 360.1 357 56.6
CiPaw.03G227200 Carya illinoinensis HOM05D004467 ORTHO05D004918 3.4e-97 359.4 359 56.5
Potri.018G085100 Populus trichocarpa HOM05D004467 ORTHO05D004918 3.4e-97 359.4 351 58.1
Duzib168G1064 Durio zibethinus HOM05D004467 ORTHO05D004918 6.4e-96 355.1 352 55.7
FAN19G0416 Fragaria x ananassa HOM05D004467 ORTHO05D004918 1.4e-95 354.0 338 58.9
RcHm_v2.0_Chr2g0091401 Rosa chinensis HOM05D004467 ORTHO05D004918 2.4e-95 353.2 338 59.8
FvH4_1g05760 Fragaria vesca HOM05D004467 ORTHO05D004918 3.2e-95 352.8 338 58.9
Manes.03G024900 Manihot esculenta HOM05D004467 ORTHO05D004918 3.2e-95 352.8 350 58.0
Hma1.2p1_0945F.1_g240200 Hydrangea macrophylla HOM05D004467 ORTHO05D004918 4.2e-95 352.4 370 55.4
Gorai.009G027000 Gossypium raimondii HOM05D004467 ORTHO05D004918 7.1e-95 351.7 353 54.1
Thecc.09G104300 Theobroma cacao HOM05D004467 ORTHO05D004918 7.1e-95 351.7 353 55.2
FAN26G1468 Fragaria x ananassa HOM05D004467 ORTHO05D004918 9.3e-95 351.3 338 58.9
FAN28G1510 Fragaria x ananassa HOM05D004467 ORTHO05D004918 1.2e-94 350.9 338 58.6
FAN23G1822 Fragaria x ananassa HOM05D004467 ORTHO05D004918 1.6e-94 350.5 338 58.6
FAN26G2528 Fragaria x ananassa HOM05D004467 ORTHO05D004918 2.7e-94 349.7 338 58.6
Gohir.D05G026900 Gossypium hirsutum HOM05D004467 ORTHO05D004918 7.8e-94 348.2 353 54.1
Sabra18G0073600 Salix brachista HOM05D004467 ORTHO05D004918 3.0e-93 346.3 351 56.4
Gohir.A05G025400 Gossypium hirsutum HOM05D004467 ORTHO05D004918 3.9e-93 345.9 353 53.5
Potri.006G162900 Populus trichocarpa HOM05D004467 ORTHO05D004918 5.6e-92 342.0 352 56.8
Duzib187G1021 Durio zibethinus HOM05D004467 ORTHO05D004918 1.7e-88 330.5 353 53.3
Manes.16G111600 Manihot esculenta HOM05D004467 ORTHO05D004918 2.2e-88 330.1 350 56.9
MD02G1058800 Malus domestica HOM05D004467 ORTHO05D004918 4.9e-88 328.9 314 57.6
PGSC0003DMG401027437 Solanum tuberosum HOM05D004467 ORTHO05D004918 4.2e-87 325.9 350 55.1
Sopen05g015080 Solanum pennellii HOM05D004467 ORTHO05D004918 1.6e-86 323.9 358 53.4
Nitab4.5_0004727g0020 Nicotiana tabacum HOM05D004467 ORTHO05D004918 3.5e-86 322.8 358 53.1
Solyc05g018320.3 Solanum lycopersicum HOM05D004467 ORTHO05D004918 1.3e-85 320.9 358 52.8
Oeu053753.2 Olea europaea HOM05D004467 ORTHO05D004918 2.5e-84 316.6 354 53.1
CANSAT56G0937 Cannabis sativa HOM05D004467 ORTHO05D004918 3.3e-84 316.2 339 52.5
Nitab4.5_0000012g0160 Nicotiana tabacum HOM05D004467 ORTHO05D004918 1.8e-82 310.5 358 51.7
Peaxi162Scf00539g00210 Petunia axillaris HOM05D004467 ORTHO05D004918 4.0e-82 309.3 358 51.1
TAR626G1578 Trochodendron aralioides HOM05D004467 ORTHO05D004918 6.5e-80 302.0 390 47.9
TAR636G0217 Trochodendron aralioides HOM05D004467 ORTHO05D004918 1.1e-79 301.2 390 47.9
MSTRG.10616 Avicennia marina HOM05D004467 ORTHO05D004918 1.4e-79 300.8 370 49.5
CAN.G587.15 Capsicum annuum HOM05D004467 ORTHO05D004918 1.8e-77 293.9 358 50.0
SalBow5G0997 Salvia bowleyana HOM05D004467 ORTHO05D004918 6.7e-77 292.0 359 49.9
Glyma.01G146400 Glycine max HOM05D004467 ORTHO05D004918 1.1e-76 291.2 339 52.2
Gohir.A06G065600 Gossypium hirsutum HOM05D004467 ORTHO05D004918 3.3e-76 289.7 353 49.0
Dinv36673 Davidia involucrata HOM05D004467 ORTHO05D004918 5.7e-76 288.9 253 62.5
ECA240G1275 Erigeron canadensis HOM05D004467 ORTHO05D004918 2.8e-75 286.6 356 49.2
Gorai.010G074900 Gossypium raimondii HOM05D004467 ORTHO05D004918 4.8e-75 285.8 353 49.6
Cpa.g.sc40.31 Carica papaya HOM05D004467 ORTHO05D004918 2.4e-74 283.5 354 49.7
Lj2g0027738 Lotus japonicus HOM05D004467 ORTHO05D004918 3.1e-74 283.1 334 51.5
DCAR_024697 Daucus carota HOM05D004467 ORTHO05D004918 6.9e-74 282.0 375 46.7
Cc06_g10170 Coffea canephora HOM05D004467 ORTHO05D004918 3.4e-73 279.6 356 50.0
TWI32G0931 Tripterygium wilfordii HOM05D004467 ORTHO05D004918 7.6e-73 278.5 353 48.2
TAR383G0828 Trochodendron aralioides HOM05D004467 ORTHO05D004918 7.6e-73 278.5 387 46.5
TWI63G0792 Tripterygium wilfordii HOM05D004467 ORTHO05D004918 6.5e-72 275.4 354 48.9
Phvul.004G169100 Phaseolus vulgaris HOM05D004467 ORTHO05D004918 3.2e-71 273.1 338 49.7
Ca_25554_v3 Cicer arietinum L. HOM05D004467 ORTHO05D004918 6.1e-70 268.9 343 49.0
VMungo0464G1817 Vigna mungo HOM05D004467 ORTHO05D004918 7.9e-70 268.5 334 49.7
arahy.Tifrunner.gnm1.ann1.4I8WV5 Arachis hypogaea HOM05D004467 ORTHO05D004918 3.9e-69 266.2 341 47.8
Nn3g18160 Nelumbo nucifera HOM05D004467 ORTHO05D004918 6.7e-69 265.4 383 44.1
arahy.Tifrunner.gnm1.ann1.6QT9XW Arachis hypogaea HOM05D004467 ORTHO05D004918 1.3e-67 261.2 342 46.8
Medtr6g087140 Medicago truncatula HOM05D004467 ORTHO05D004918 1.3e-67 261.2 338 47.3
Psat1g045360 Pisum sativum HOM05D004467 ORTHO05D004918 1.3e-67 261.2 339 47.5
Glyma.09G193900 Glycine max HOM05D004467 ORTHO05D004918 4.8e-67 259.2 340 48.8
Lalb_Chr05g0223111 Lupinus albus HOM05D004467 ORTHO05D004918 7.7e-65 251.9 339 46.3
Eucgr.C03788 Eucalyptus grandis HOM05D004467 ORTHO05D004918 3.8e-64 249.6 338 45.3
Lalb_Chr16g0388041 Lupinus albus HOM05D004467 ORTHO05D004918 1.9e-63 247.3 373 42.4
PGR102G2224 Punica granatum HOM05D004467 ORTHO05D004918 4.2e-63 246.1 372 44.9
ClCG11G002290 Citrullus lanatus HOM05D004467 ORTHO05D004918 5.7e-60 235.7 332 45.2
CsaV3_2G002070 Cucumis sativus L. HOM05D004467 ORTHO05D004918 1.3e-59 234.6 332 45.5
Lj8C70G12 Lonicera japonica HOM05D004467 ORTHO05D004918 3.7e-59 233.0 374 46.0
Gohir.D06G064200 Gossypium hirsutum HOM05D004467 ORTHO05D004918 1.4e-58 231.1 353 42.8
MELO3C004575.2 Cucumis melo HOM05D004467 ORTHO05D004918 3.1e-58 229.9 332 44.9
TPR.G28824 Trifolium pratense HOM05D004467 ORTHO05D004918 6.9e-58 228.8 339 45.1
Lsat_1_v5_gn_7_41160 Lactuca sativa HOM05D004467 ORTHO05D004918 3.8e-56 223.0 372 41.9
Hund26245 Selenicereus undatus HOM05D004467 ORTHO05D004918 9.4e-55 218.4 338 39.9
Sed0000460 Sechium edule HOM05D004467 ORTHO05D004918 7.9e-54 215.3 327 44.0
EL10Ac8g18417 Beta vulgaris HOM05D004467 ORTHO05D004918 5.7e-52 209.1 341 40.8
AUR62021444 Chenopodium quinoa HOM05D004467 ORTHO05D004918 6.3e-51 205.7 333 41.4
Migut.K00515 Erythranthe guttata HOM05D004467 ORTHO05D004918 3.5e-49 199.9 353 39.7
AUR62010932 Chenopodium quinoa HOM05D004467 ORTHO05D004918 2.2e-48 197.2 333 40.8
SGA_v2.0_scaffold5G02535 Striga asiatica HOM05D004467 ORTHO05D004918 8.5e-48 195.3 359 40.4
Aqoxy7G01500 Aquilegia oxysepala HOM05D004467 ORTHO05D004918 5.5e-47 192.6 384 36.7
CsaV3_6G021320 Cucumis sativus L. HOM05D004467 ORTHO05D004918 5.5e-47 192.6 336 39.9
MELO3C024641.2 Cucumis melo HOM05D004467 ORTHO05D004918 2.6e-44 183.7 353 36.8
PSO210G6045 Papaver somniferum HOM05D004467 ORTHO05D004918 7.2e-39 165.6 386 36.8
Hund09233 Selenicereus undatus HOM05D004467 ORTHO05D004918 2.1e-38 164.1 361 34.9
THA.LOC104820046 Tarenaya hassleriana HOM05D004467 ORTHO05D004918 2.7e-38 163.7 338 40.5
HanXRQChr03g0061251 Helianthus annuus HOM05D004467 ORTHO05D004918 1.0e-37 161.8 311 37.9
PSO210G7819 Papaver somniferum HOM05D004467 ORTHO05D004918 1.8e-37 161.0 386 36.3
AT4G28910 Arabidopsis thaliana HOM05D004467 ORTHO05D004918 2.0e-36 157.5 350 39.7
AL7G23580 Arabidopsis lyrata HOM05D004467 ORTHO05D004918 9.8e-36 155.2 356 39.0
Sed0017359 Sechium edule HOM05D004467 ORTHO05D004918 2.2e-35 154.1 389 35.5
Carub.0007s1175 Capsella rubella HOM05D004467 ORTHO05D004918 2.8e-35 153.7 332 40.4
CARHR236680 Cardamine hirsuta HOM05D004467 ORTHO05D004918 1.4e-34 151.4 329 39.2
Thhalv10025262m.g Eutrema salsugineum HOM05D004467 ORTHO05D004918 1.4e-34 151.4 347 40.6
HanXRQChr09g0239001 Helianthus annuus HOM05D004467 ORTHO05D004918 1.4e-34 151.4 314 37.9
Sp7g26880 Schrenkiella parvula HOM05D004467 ORTHO05D004918 7.0e-34 149.1 329 40.1
unitig_22.g6724 Utricularia gibba HOM05D004467 ORTHO05D004918 1.0e-29 135.2 334 35.0
Sc08g0007800 Simmondsia chinensis HOM05D004467 ORTHO05D004918 1.4e-29 134.8 371 32.9
BraA01t00851Z Brassica rapa HOM05D004467 ORTHO05D004918 6.8e-29 132.5 357 38.7
MBI01_g39827_MAGBIO Magnolia biondii HOM05D004467 ORTHO05D004918 1.2e-28 131.7 391 33.8
TAR636G1964 Trochodendron aralioides HOM05D004467 ORTHO05D004918 7.5e-28 129.0 287 38.7
BolC1t01020H Brassica oleracea HOM05D004467 ORTHO05D004918 6.3e-27 125.9 348 37.6
BcaC09g51670 Brassica carinata HOM05D004467 ORTHO05D004918 1.1e-26 125.2 347 37.8
A01p09030 Brassica napus HOM05D004467 ORTHO05D004918 2.4e-26 124.0 368 37.8
C01p10580 Brassica napus HOM05D004467 ORTHO05D004918 2.4e-26 124.0 347 37.5
BcaNung01350 Brassica carinata HOM05D004467 ORTHO05D004918 7.0e-26 122.5 335 38.8
CsaV3_1G019490 Cucumis sativus L. HOM05D004467 ORTHO05D004918 9.1e-26 122.1 218 38.1
ATR0705G047 Amborella trichopoda HOM05D004467 ORTHO05D004918 4.5e-25 119.8 375 30.4
BcaNung06399 Brassica carinata HOM05D004467 ORTHO05D004918 9.8e-20 102.1 309 36.9
CDE05G2925 Ceratophyllum demersum HOM05D004467 ORTHO05D004918 4.1e-18 96.7 354 30.8
CDE05G0303 Ceratophyllum demersum HOM05D004467 ORTHO05D004918 1.2e-17 95.1 346 29.2
Aa31LG2G21270 Aethionema arabicum HOM05D004467 ORTHO05D004918 1.6e-17 94.7 327 34.6
HPP92_027881 Vanilla planifolia HOM05D004467 ORTHO05D004918 1.6e-17 94.7 393 29.8
MBI01_g24452_MAGBIO Magnolia biondii HOM05D004467 ORTHO05D004918 3.5e-17 93.6 412 30.3
A03p58480 Brassica napus HOM05D004467 ORTHO05D004918 7.8e-17 92.4 315 32.4
BraA03t14909Z Brassica rapa HOM05D004467 ORTHO05D004918 1.0e-16 92.0 315 32.4
BcaNung02901 Brassica carinata HOM05D004467 ORTHO05D004918 3.9e-16 90.1 319 32.3
C07p56500 Brassica napus HOM05D004467 ORTHO05D004918 3.9e-16 90.1 319 32.3
THA.LOC104814564 Tarenaya hassleriana HOM05D004467 ORTHO05D004918 5.0e-16 89.7 366 30.3
BolC7t46129H Brassica oleracea HOM05D004467 ORTHO05D004918 1.9e-15 87.8 320 32.5
Os05g0558800 Oryza sativa ssp. japonica HOM05D004467 ORTHO05D004918 2.6e-12 77.4 385 26.2
Zm00001eb343360 Zea mays HOM05D004467 ORTHO05D004918 7.5e-12 75.9 387 27.1
SEGI_06055 Sequoiadendron giganteum HOM05D025566 ORTHO05D004918 1.4e-10 71.6 419 28.4
Aa31LG8G16970 Aethionema arabicum HOM05D004467 ORTHO05D004918 2.0e-09 67.8 179 35.8
GSVIVG01015335001 Vitis vinifera HOM05D004467 ORTHO05D004918 4.3e-07 60.1 52 53.8
CsaV3_1G019480 Cucumis sativus L. HOM05D004467 ORTHO05D004918 1.2e-06 58.5 66 50.0
HPP92_006324 Vanilla planifolia HOM05D004467 ORTHO05D004918 1.6e-06 58.2 195 35.9
SEGI_21638 Sequoiadendron giganteum HOM05D025566 ORTHO05D004918 2.8e-06 57.4 416 26.4
BcaNung01354 Brassica carinata HOM05D004467 ORTHO05D004918 6.2e-06 56.2 184 34.2
SEGI_16741 Sequoiadendron giganteum HOM05D025566 ORTHO05D004918 8.1e-06 55.8 415 26.3


User provided reference genes

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