Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 4.4e-24 114.4 86 100.0
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 1.3e-15 86.3 87 72.4
Nitab4.5_0010633g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 4.8e-15 84.3 90 78.9
Peaxi162Scf00519g00621 Petunia axillaris HOM05D007506 ORTHO05D008409 8.3e-15 83.6 86 80.2
Hma1.2p1_0756F.1_g213215 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 2.4e-14 82.0 88 77.3
Hma1.2p1_1491F.1_g286710 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 2.4e-14 82.0 88 77.3
Nitab4.5_0005214g0030 Nicotiana tabacum HOM05D007506 ORTHO05D008409 2.4e-14 82.0 90 77.8
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 9.1e-14 80.1 87 59.8
Dinv02210 Davidia involucrata HOM05D007506 ORTHO05D008409 1.6e-13 79.3 87 78.2
Hma1.2p1_0756F.1_g213210 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 3.5e-13 78.2 57 73.7
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 4.5e-13 77.8 56 76.8
Solyc11g006750.1 Solanum lycopersicum HOM05D007506 ORTHO05D008409 4.5e-13 77.8 87 78.2
Sopen11g002680 Solanum pennellii HOM05D007506 ORTHO05D008409 4.5e-13 77.8 87 78.2
PGSC0003DMG400023979 Solanum tuberosum HOM05D007506 ORTHO05D008409 1.1e-11 73.2 56 75.0
CAN.G1373.1 Capsicum annuum HOM05D007506 ORTHO05D008409 1.5e-11 72.8 57 71.9
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 2.5e-11 72.0 55 70.9
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 5.5e-11 70.9 55 70.9
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 7.2e-11 70.5 55 69.1
CANSAT56G4328 Cannabis sativa HOM05D007506 ORTHO05D008409 9.5e-11 70.1 56 71.4
Peaxi162Scf00125g00216 Petunia axillaris HOM05D007506 ORTHO05D008409 9.5e-11 70.1 56 69.6
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 3.6e-10 68.2 57 68.4
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 4.7e-10 67.8 55 69.1
vmacro10310 Vaccinium macrocarpon HOM05D007506 ORTHO05D008409 6.1e-10 67.4 55 70.9
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 8.0e-10 67.0 55 67.3
Nitab4.5_0015562g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 8.0e-10 67.0 52 71.2
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 1.0e-09 66.6 60 68.3
Dinv02209 Davidia involucrata HOM05D007506 ORTHO05D008409 1.4e-09 66.2 87 72.4
Dinv07589 Davidia involucrata HOM05D007506 ORTHO05D008409 1.4e-09 66.2 87 72.4
PGSC0003DMG400023393 Solanum tuberosum HOM05D007506 ORTHO05D008409 1.4e-09 66.2 59 69.5
CsaV3_6G004310 Cucumis sativus L. HOM05D007506 ORTHO05D008409 2.3e-09 65.5 55 65.5
SalBow6G2037 Salvia bowleyana HOM05D007506 ORTHO05D008409 2.3e-09 65.5 56 67.9
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 3.0e-09 65.1 57 70.2
ClCG08G008330 Citrullus lanatus HOM05D007506 ORTHO05D008409 5.2e-09 64.3 55 65.5
MELO3C019903.2 Cucumis melo HOM05D007506 ORTHO05D008409 5.2e-09 64.3 55 65.5
MBI17_g08330_MAGBIO Magnolia biondii HOM05D007506 ORTHO05D008409 5.2e-09 64.3 56 62.5
Oeu024806.1 Olea europaea HOM05D007506 ORTHO05D008409 8.9e-09 63.5 55 65.5
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 8.9e-09 63.5 58 65.5
Oeu027974.1 Olea europaea HOM05D007506 ORTHO05D008409 1.2e-08 63.2 56 71.4
TWI38G1985 Tripterygium wilfordii HOM05D007506 ORTHO05D008409 2.0e-08 62.4 55 61.8
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 2.6e-08 62.0 44 72.7
Solyc05g055250.2 Solanum lycopersicum HOM05D007506 ORTHO05D008409 2.6e-08 62.0 59 66.1
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 4.4e-08 61.2 53 66.0
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 4.4e-08 61.2 57 61.4
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 4.4e-08 61.2 55 61.8
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 4.4e-08 61.2 58 65.5
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 5.7e-08 60.8 57 64.9
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 7.5e-08 60.5 55 67.3
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 7.5e-08 60.5 57 63.2
Sc20g0001140 Simmondsia chinensis HOM05D007506 ORTHO05D008409 7.5e-08 60.5 60 63.3
CiPaw.13G041100 Carya illinoinensis HOM05D007506 ORTHO05D008409 9.8e-08 60.1 40 80.0
CAN.G1417.6 Capsicum annuum HOM05D007506 ORTHO05D008409 1.3e-07 59.7 52 67.3
unitig_899.g14468 Utricularia gibba HOM05D007506 ORTHO05D008409 1.3e-07 59.7 36 83.3
Nn6g34869 Nelumbo nucifera HOM05D007506 ORTHO05D008409 1.7e-07 59.3 56 64.3
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 1.7e-07 59.3 57 63.2
Sopen05g033690 Solanum pennellii HOM05D007506 ORTHO05D008409 1.7e-07 59.3 57 64.9
VMungo0720G0153 Vigna mungo HOM05D007506 ORTHO05D008409 1.7e-07 59.3 55 65.5
CDE12G0642 Ceratophyllum demersum HOM05D007506 ORTHO05D008409 2.2e-07 58.9 55 61.8
Lsat_1_v5_gn_8_24340 Lactuca sativa HOM05D021830 ORTHO05D025293 2.2e-07 58.9 56 64.3
TAR636G0277 Trochodendron aralioides HOM05D007506 ORTHO05D008409 2.2e-07 58.9 55 61.8
Medtr1g111840 Medicago truncatula HOM05D007506 ORTHO05D008409 3.7e-07 58.2 55 63.6
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 4.9e-07 57.8 57 63.2
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 4.9e-07 57.8 40 77.5
Aqoxy7G00782 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 6.3e-07 57.4 55 63.6
Phvul.007G023500 Phaseolus vulgaris HOM05D007506 ORTHO05D008409 6.3e-07 57.4 55 63.6
QL04p046828 Quercus lobata HOM05D007506 ORTHO05D008409 6.3e-07 57.4 57 66.7
Os08g0558900 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 8.3e-07 57.0 56 58.9
HPP92_013812 Vanilla planifolia HOM05D007506 ORTHO05D008409 1.1e-06 56.6 29 89.7
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 1.4e-06 56.2 57 64.9
SGA_v2.0_scaffold62G21316 Striga asiatica HOM05D007506 ORTHO05D008409 1.4e-06 56.2 51 62.7
EL10Ac4g08692 Beta vulgaris HOM05D007506 ORTHO05D008409 1.8e-06 55.8 61 62.3
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 1.8e-06 55.8 55 65.5
Os02g0533800 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 1.8e-06 55.8 66 54.5
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 2.4e-06 55.5 53 64.2
Ca_25653_v3 Cicer arietinum L. HOM05D007506 ORTHO05D008409 3.1e-06 55.1 55 61.8
HanXRQChr12g0368271 Helianthus annuus HOM05D021830 ORTHO05D008409 3.1e-06 55.1 57 63.2
PSO801G0534 Papaver somniferum HOM05D007506 ORTHO05D008409 3.1e-06 55.1 55 54.5
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 3.1e-06 55.1 53 66.0
MD07G1070900 Malus domestica HOM05D007506 ORTHO05D008409 4.1e-06 54.7 51 58.8
AUR62042085 Chenopodium quinoa HOM05D007506 ORTHO05D008409 5.4e-06 54.3 59 61.0
Glyma.20G110900 Glycine max HOM05D007506 ORTHO05D008409 5.4e-06 54.3 56 66.1
Sabra10G0188200 Salix brachista HOM05D007506 ORTHO05D008409 5.4e-06 54.3 52 65.4
Zm00001eb039390 Zea mays HOM05D007506 ORTHO05D008409 5.4e-06 54.3 54 53.7
FvH4_7g05151 Fragaria vesca HOM05D007506 ORTHO05D008409 7.0e-06 53.9 55 56.4
FAN05G5073 Fragaria x ananassa HOM05D007506 ORTHO05D008409 7.0e-06 53.9 55 56.4
FAN08G2571 Fragaria x ananassa HOM05D007506 ORTHO05D008409 7.0e-06 53.9 55 56.4
FAN28G2052 Fragaria x ananassa HOM05D007506 ORTHO05D008409 7.0e-06 53.9 55 56.4
Zm00001eb252110 Zea mays HOM05D000188 ORTHO05D003976 7.0e-06 53.9 55 54.5
Cfa010331 Carpinus fangiana HOM05D007506 ORTHO05D008409 9.2e-06 53.5 53 62.3


User provided reference genes

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