Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.1e-63 246.5 125 100.0
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 5.4e-31 137.9 97 74.2
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 7.0e-31 137.5 96 70.8
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.5e-28 129.8 97 72.2
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.2e-27 126.7 95 66.3
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.2e-27 126.7 95 66.3
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.8e-27 125.6 97 69.1
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 4.7e-27 124.8 98 66.3
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.0e-26 121.7 97 66.0
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 3.7e-24 115.2 98 60.2
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.9e-24 114.8 96 64.6
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 6.0e-22 107.8 96 61.5
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.3e-21 106.7 96 50.0
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.7e-21 106.3 97 54.6
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.7e-21 106.3 100 55.0
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.5e-20 103.2 96 55.2
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 5.6e-20 101.3 100 52.0
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 7.3e-20 100.9 94 54.3
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 7.3e-20 100.9 97 52.6
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 1.2e-19 100.1 96 54.2
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 2.8e-19 99.0 150 40.7
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.6e-19 98.6 99 59.6
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 4.7e-19 98.2 100 53.0
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 6.2e-19 97.8 123 43.1
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 1.1e-18 97.1 96 50.0
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.1e-18 97.1 87 54.0
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.8e-18 96.3 96 51.0
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 2.3e-18 95.9 96 53.1
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.1e-18 95.5 96 54.2
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.1e-18 95.5 96 52.1
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 4.0e-18 95.1 97 55.7
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 4.0e-18 95.1 96 52.1
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 6.8e-18 94.4 97 50.5
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 8.9e-18 94.0 96 47.9
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-17 93.6 123 45.5
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 2.0e-17 92.8 95 52.6
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.0e-17 92.8 107 43.9
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.6e-17 92.4 84 58.3
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.6e-17 92.4 97 50.5
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.4e-17 92.0 95 52.6
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.4e-17 92.0 97 51.5
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.4e-17 92.0 96 47.9
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 5.8e-17 91.3 97 50.5
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.8e-17 91.3 96 47.9
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 5.8e-17 91.3 64 75.0
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.7e-16 89.7 96 47.9
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.7e-16 89.7 68 70.6
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 2.2e-16 89.4 97 49.5
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 2.2e-16 89.4 95 52.6
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.2e-16 89.4 96 47.9
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 2.9e-16 89.0 99 53.5
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.7e-16 88.6 96 45.8
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.9e-16 88.2 97 48.5
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 8.3e-16 87.4 96 46.9
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.4e-15 86.7 92 46.7
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 1.4e-15 86.7 97 48.5
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.9e-15 86.3 105 46.7
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.9e-15 86.3 93 51.6
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 3.2e-15 85.5 98 53.1
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 4.1e-15 85.1 104 51.9
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 7.0e-15 84.3 106 49.1
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 7.0e-15 84.3 93 47.3
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.2e-14 83.6 98 51.0
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.2e-14 83.6 96 54.2
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.6e-14 83.2 96 49.0
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.6e-14 83.2 99 46.5
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.6e-14 83.2 95 47.4
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 2.7e-14 82.4 96 49.0
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 2.7e-14 82.4 104 49.0
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.5e-14 82.0 94 55.3
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 4.6e-14 81.6 96 49.0
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 7.8e-14 80.9 100 51.0
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 7.8e-14 80.9 96 41.7
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.8e-14 80.9 99 45.5
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 7.8e-14 80.9 97 52.6
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 7.8e-14 80.9 94 45.7
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.0e-13 80.5 95 50.5
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 2.3e-13 79.3 91 50.5
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 3.0e-13 79.0 114 48.2
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 3.9e-13 78.6 106 47.2
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 3.9e-13 78.6 100 50.0
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 3.9e-13 78.6 106 41.5
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 5.1e-13 78.2 86 55.8
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.1e-13 78.2 65 66.2
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 6.6e-13 77.8 98 48.0
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 8.6e-13 77.4 78 51.3
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 8.6e-13 77.4 95 42.1
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 8.6e-13 77.4 91 46.2
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 1.1e-12 77.0 94 43.6
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 1.1e-12 77.0 94 43.6
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.1e-12 77.0 94 46.8
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 1.1e-12 77.0 86 47.7
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 1.5e-12 76.6 82 53.7
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 1.5e-12 76.6 91 45.1
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.5e-12 76.6 97 45.4
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 2.5e-12 75.9 96 45.8
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.5e-12 75.9 99 44.4
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 2.5e-12 75.9 55 65.5
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.5e-12 75.9 100 45.0
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 3.3e-12 75.5 98 48.0
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 5.6e-12 74.7 98 45.9
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 5.6e-12 74.7 86 50.0
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 7.3e-12 74.3 94 42.6
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 7.3e-12 74.3 88 42.0
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 7.3e-12 74.3 88 42.0
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 7.3e-12 74.3 97 47.4
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 9.5e-12 73.9 93 41.9
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 9.5e-12 73.9 62 62.9
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 1.2e-11 73.6 96 44.8
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.2e-11 73.6 90 47.8
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.6e-11 73.2 95 48.4
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.8e-11 72.4 100 43.0
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.6e-11 72.0 91 46.2
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 4.7e-11 71.6 101 46.5
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 6.2e-11 71.2 94 42.6
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 6.2e-11 71.2 79 54.4
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 6.2e-11 71.2 96 41.7
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 6.2e-11 71.2 64 57.8
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.1e-10 70.5 105 44.8
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.1e-10 70.5 97 46.4
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 1.4e-10 70.1 94 43.6
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.8e-10 69.7 97 43.3
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 2.3e-10 69.3 83 43.4
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 3.1e-10 68.9 89 46.1
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 3.1e-10 68.9 97 42.3
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 4.0e-10 68.6 100 41.0
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 4.0e-10 68.6 113 45.1
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 4.0e-10 68.6 81 48.1
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 4.0e-10 68.6 85 37.6
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 5.2e-10 68.2 87 41.4
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 6.8e-10 67.8 94 46.8
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 6.8e-10 67.8 62 48.4
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 8.9e-10 67.4 98 44.9
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-09 67.0 41 75.6
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-09 67.0 41 73.2
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-09 67.0 41 73.2
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.2e-09 67.0 99 42.4
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 1.5e-09 66.6 96 37.5
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.0e-09 66.2 100 41.0
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 2.0e-09 66.2 92 46.7
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 2.6e-09 65.9 105 39.0
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 3.4e-09 65.5 97 42.3
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 3.4e-09 65.5 95 43.2
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.4e-09 65.5 95 43.2
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 3.4e-09 65.5 96 40.6
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 4.4e-09 65.1 41 65.9
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 4.4e-09 65.1 86 41.9
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 4.4e-09 65.1 84 46.4
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 5.8e-09 64.7 102 42.2
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 5.8e-09 64.7 102 42.2
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 5.8e-09 64.7 92 40.2
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 7.5e-09 64.3 90 41.1
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.9e-09 63.9 98 39.8
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 9.9e-09 63.9 43 67.4
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.7e-08 63.2 94 43.6
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.7e-08 63.2 41 68.3
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 2.2e-08 62.8 88 40.9
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 2.9e-08 62.4 97 40.2
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 2.9e-08 62.4 79 40.5
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 6.4e-08 61.2 102 36.3
Dinv12522 Davidia involucrata HOM05D003745 ORTHO05D004215 8.3e-08 60.8 59 61.0
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 1.1e-07 60.5 40 65.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 1.1e-07 60.5 40 65.0
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.4e-07 60.1 90 38.9
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.4e-07 60.1 44 63.6
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.4e-07 60.1 87 41.4
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.4e-07 60.1 92 41.3
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.4e-07 59.3 97 42.3
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 3.2e-07 58.9 45 60.0
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 4.1e-07 58.5 101 37.6
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 4.1e-07 58.5 92 41.3
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.4e-07 58.2 92 35.9
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.4e-07 58.2 94 36.2
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 7.1e-07 57.8 102 38.2
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 9.2e-07 57.4 93 39.8
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 9.2e-07 57.4 37 64.9
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 9.2e-07 57.4 83 41.0
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 9.2e-07 57.4 92 44.6
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.6e-06 56.6 93 35.5
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.6e-06 56.6 93 35.5
Actinidia39884 Actinidia chinensis HOM05D000123 ORTHO05D000064 2.1e-06 56.2 79 44.3
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.1e-06 56.2 47 53.2
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 3.5e-06 55.5 35 68.6


User provided reference genes

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